{
    "type": "genome",
    "identifier": "GCA_948441855.1",
    "organism": "Romboutsia ilealis",
    "title": "Romboutsia ilealis",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_948441855.1",
        "bioproject": "PRJEB58054",
        "biosample": "SAMEA112353779",
        "wgs_master": "CAOJQT000000000.1",
        "refseq_category": "na",
        "taxid": "1115758",
        "species_taxid": "1115758",
        "organism_name": "Romboutsia ilealis",
        "infraspecific_name": "",
        "isolate": "SRR17684633_bin.54_metawrap_v1.3_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/02/03",
        "asm_name": "SRR17684633_bin.54_metawrap_v1.3_MAG",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/948/441/855/GCA_948441855.1_SRR17684633_bin.54_metawrap_v1.3_MAG",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-02-03",
    "dateModified": "2023-02-03",
    "datePublished": "2023-02-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Romboutsia ilealis"
        ],
        "sample_taxid": [
            "1115758"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada"
        ],
        "sample_host_location_id": [],
        "data_size": "0.629 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2295629",
        "Number of Sequences": "203",
        "Longest Sequences (bp)": "72007",
        "N50 (bp)": "17370",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "27.2",
        "Number of CDSs": "2100",
        "Average Protein Length": "294.8",
        "Coding Ratio (%)": "80.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "14",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Romboutsia ilealis",
                "strain": "strain=CRIB",
                "accession": "GCA_900015215.1",
                "taxid": 1115758,
                "species_taxid": 1115758,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.5701,
                "matched_fragments": 605,
                "total_fragments": 658,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Romboutsia timonensis",
                "strain": "strain=Marseille-P326",
                "accession": "GCA_900106845.1",
                "taxid": 1776391,
                "species_taxid": 1776391,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.1572,
                "matched_fragments": 559,
                "total_fragments": 658,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Clostridium] dakarense",
                "strain": "strain=FF1",
                "accession": "GCA_000499525.1",
                "taxid": 1301100,
                "species_taxid": 1301100,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1291,
                "matched_fragments": 339,
                "total_fragments": 658,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Romboutsia hominis",
                "strain": "strain=FRIFI",
                "accession": "GCA_900002575.1",
                "taxid": 1507512,
                "species_taxid": 1507512,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9997,
                "matched_fragments": 346,
                "total_fragments": 658,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Romboutsia lituseburensis",
                "strain": "strain=DSM 797",
                "accession": "GCA_900103615.1",
                "taxid": 1537,
                "species_taxid": 1537,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9164,
                "matched_fragments": 353,
                "total_fragments": 658,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Romboutsia lituseburensis",
                "strain": "strain=A25K",
                "accession": "GCA_900002825.1",
                "taxid": 1537,
                "species_taxid": 1537,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8309,
                "matched_fragments": 361,
                "total_fragments": 658,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraclostridium bifermentans",
                "strain": "strain=ATCC 638",
                "accession": "GCA_006802875.1",
                "taxid": 1490,
                "species_taxid": 1490,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9377,
                "matched_fragments": 294,
                "total_fragments": 658,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900015215.1",
                "gtdb_species": "s__Romboutsia ilealis",
                "ani": 98.5375,
                "matched_fragments": 606,
                "total_fragments": 658,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.59",
                "min_intra_species_ani": "98.59",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900106845.1",
                "gtdb_species": "s__Romboutsia timonensis",
                "ani": 92.1888,
                "matched_fragments": 558,
                "total_fragments": 658,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.20",
                "min_intra_species_ani": "98.12",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_904418825.1",
                "gtdb_species": "s__Romboutsia sp904418825",
                "ani": 89.3947,
                "matched_fragments": 461,
                "total_fragments": 658,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.17",
                "min_intra_species_ani": "99.17",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018336475.1",
                "gtdb_species": "s__Romboutsia sp018336475",
                "ani": 86.8055,
                "matched_fragments": 540,
                "total_fragments": 658,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000499525.1",
                "gtdb_species": "s__CCUG-7971 spG000499525",
                "ani": 81.1288,
                "matched_fragments": 339,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__CCUG-7971",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900002575.1",
                "gtdb_species": "s__Romboutsia_C hominis",
                "ani": 81.0079,
                "matched_fragments": 346,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.29",
                "min_intra_species_ani": "95.25",
                "mean_intra_species_af": "0.93",
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                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_017425305.1",
                "gtdb_species": "s__Paraclostridium sp017425305",
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                "matched_fragments": 134,
                "total_fragments": 658,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Paraclostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.54",
                "min_intra_species_ani": "97.54",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_017590215.1",
                "gtdb_species": "s__CCUG-7971 sp017590215",
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                "matched_fragments": 347,
                "total_fragments": 658,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__CCUG-7971",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.146,
        "cell_length": 0.491,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
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        "genome_size": 3758965.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Peptostreptococcales",
        "f__Peptostreptococcaceae",
        "g__Romboutsia",
        "s__Romboutsia ilealis"
    ],
    "_genome_taxon": [
        "Romboutsia",
        "ilealis",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Peptostreptococcales",
        "f__Peptostreptococcaceae",
        "g__Romboutsia",
        "s__Romboutsia ilealis",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Peptostreptococcales",
        "Peptostreptococcaceae",
        "Romboutsia",
        "Romboutsia",
        "ilealis"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}