{
    "type": "genome",
    "identifier": "GCA_948468555.1",
    "organism": "Citrobacter amalonaticus",
    "title": "Citrobacter amalonaticus",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_948468555.1",
        "bioproject": "PRJEB58021",
        "biosample": "SAMEA112229204",
        "wgs_master": "CAOKIY000000000.1",
        "refseq_category": "na",
        "taxid": "35703",
        "species_taxid": "35703",
        "organism_name": "Citrobacter amalonaticus",
        "infraspecific_name": "",
        "isolate": "SRR15604516_bin.43_metawrap_v1.3_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/02/03",
        "asm_name": "SRR15604516_bin.43_metawrap_v1.3_MAG",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/948/468/555/GCA_948468555.1_SRR15604516_bin.43_metawrap_v1.3_MAG",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-02-03",
    "dateModified": "2023-02-03",
    "datePublished": "2023-02-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Citrobacter amalonaticus"
        ],
        "sample_taxid": [
            "35703"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "1.356 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4763154",
        "Number of Sequences": "18",
        "Longest Sequences (bp)": "734138",
        "N50 (bp)": "563125",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.4",
        "Number of CDSs": "4462",
        "Average Protein Length": "316.0",
        "Coding Ratio (%)": "88.8",
        "Number of rRNAs": "2",
        "Number of tRNAs": "71",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Citrobacter amalonaticus",
                "strain": "strain=FDAARGOS_1489",
                "accession": "GCA_020099335.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 99.1266,
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                "total_fragments": 1578,
                "ani_threshold": 95,
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            },
            {
                "organism_name": "Citrobacter amalonaticus",
                "strain": "strain=JCM 1661",
                "accession": "GCA_018323885.1",
                "taxid": 35703,
                "species_taxid": 35703,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.1222,
                "matched_fragments": 1482,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Citrobacter farmeri",
                "strain": "strain=FDAARGOS 1423",
                "accession": "GCA_019048065.1",
                "taxid": 67824,
                "species_taxid": 67824,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.4376,
                "matched_fragments": 1391,
                "total_fragments": 1578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Citrobacter rodentium",
                "strain": "strain=DSM 16636",
                "accession": "GCA_021278985.1",
                "taxid": 67825,
                "species_taxid": 67825,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.9365,
                "matched_fragments": 1142,
                "total_fragments": 1578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Citrobacter rodentium",
                "strain": "strain=DSM 16636",
                "accession": "GCA_015965555.1",
                "taxid": 67825,
                "species_taxid": 67825,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.9007,
                "matched_fragments": 1117,
                "total_fragments": 1578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salmonella enterica subsp. enterica",
                "strain": "strain=PartC-Senterica-RM8376",
                "accession": "GCA_022869965.1",
                "taxid": 59201,
                "species_taxid": 28901,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 82.6995,
                "matched_fragments": 971,
                "total_fragments": 1578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter wuhouensis",
                "strain": "strain=WCHEW120002",
                "accession": "GCA_004331265.1",
                "taxid": 2529381,
                "species_taxid": 2529381,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1188,
                "matched_fragments": 876,
                "total_fragments": 1578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter roggenkampii",
                "strain": "strain=DSM 16690",
                "accession": "GCA_024390995.1",
                "taxid": 1812935,
                "species_taxid": 1812935,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8948,
                "matched_fragments": 859,
                "total_fragments": 1578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter sichuanensis",
                "strain": "strain=WCHECL1597",
                "accession": "GCA_025002605.1",
                "taxid": 2071710,
                "species_taxid": 2071710,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6495,
                "matched_fragments": 889,
                "total_fragments": 1578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Klebsiella oxytoca",
                "strain": "strain=DSM 5175",
                "accession": "GCA_020115535.1",
                "taxid": 571,
                "species_taxid": 571,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.219,
                "matched_fragments": 835,
                "total_fragments": 1578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Klebsiella oxytoca",
                "strain": "strain=NBRC 105695",
                "accession": "GCA_001598695.1",
                "taxid": 571,
                "species_taxid": 571,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.189,
                "matched_fragments": 861,
                "total_fragments": 1578,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_018323885.1",
                "gtdb_species": "s__Citrobacter_A amalonaticus",
                "ani": 99.1222,
                "matched_fragments": 1482,
                "total_fragments": 1578,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.67",
                "min_intra_species_ani": "95.02",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 59,
                "status": "conclusive"
            },
            {
                "accession": "GCF_018252635.1",
                "gtdb_species": "s__Citrobacter_A amalonaticus_E",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
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                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000981805.1",
                "gtdb_species": "s__Citrobacter_A amalonaticus_C",
                "ani": 91.8854,
                "matched_fragments": 1388,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009363175.1",
                "gtdb_species": "s__Citrobacter_A telavivensis",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_019048065.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.22",
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                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 16,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 34.5,
        "optimum_tmp": 28.0,
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        "genome_size": 5136887.889,
        "gc_content": 53.338,
        "coding_genes": 4864.5,
        "rRNA16S_genes": 7.0,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
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        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
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        "coccobacillus_cell_shape": 0.0,
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    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Enterobacterales",
        "f__Enterobacteriaceae",
        "g__Citrobacter_A",
        "s__Citrobacter_A amalonaticus"
    ],
    "_genome_taxon": [
        "Citrobacter",
        "amalonaticus",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Enterobacterales",
        "f__Enterobacteriaceae",
        "g__Citrobacter_A",
        "s__Citrobacter_A amalonaticus",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Enterobacterales",
        "Enterobacteriaceae",
        "Citrobacter",
        "A",
        "Citrobacter",
        "A",
        "amalonaticus"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}