{ "type": "genome", "identifier": "GCA_948472575.1", "organism": "uncultured Eggerthella sp.", "title": "uncultured Eggerthella sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_948472575.1", "bioproject": "PRJEB58054", "biosample": "SAMEA112353558", "wgs_master": "CAOKUS000000000.1", "refseq_category": "na", "taxid": "293422", "species_taxid": "293422", "organism_name": "uncultured Eggerthella sp.", "infraspecific_name": "", "isolate": "SRR17622768_bin.81_metawrap_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/03", "asm_name": "SRR17622768_bin.81_metawrap_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/948/472/575/GCA_948472575.1_SRR17622768_bin.81_metawrap_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-03", "dateModified": "2023-02-03", "datePublished": "2023-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Eggerthella sp." ], "sample_taxid": [ "293422" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada" ], "sample_host_location_id": [], "data_size": "0.556 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1957882", "Number of Sequences": "30", "Longest Sequences (bp)": "292777", "N50 (bp)": "153005", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.6", "Number of CDSs": "1724", "Average Protein Length": "325.5", "Coding Ratio (%)": "86.0", "Number of rRNAs": "0", "Number of tRNAs": "51", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Senegalimassilia faecalis", "strain": "strain=KGMB04484", "accession": "GCA_004135645.1", "taxid": 2509433, "species_taxid": 2509433, "relation_to_type": "type", "validated": true, "ani": 77.9113, "matched_fragments": 152, "total_fragments": 639, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Senegalimassilia anaerobia", "strain": "strain=type strain: JC110", "accession": "GCA_000236865.1", "taxid": 1473216, "species_taxid": 1473216, "relation_to_type": "type", "validated": true, "ani": 77.8251, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Slackia isoflavoniconvertens", "strain": "strain=DSM 22006", "accession": "GCA_003725955.1", "taxid": 572010, "species_taxid": 572010, "relation_to_type": "type", "validated": true, "ani": 77.2422, "matched_fragments": 89, "total_fragments": 639, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Slackia isoflavoniconvertens", "strain": "strain=DSM 22006", "accession": "GCA_014192995.1", "taxid": 572010, "species_taxid": 572010, "relation_to_type": "type", "validated": true, "ani": 77.2142, "matched_fragments": 92, "total_fragments": 639, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonibacter urolithinfaciens", "strain": "strain=DSM 27213T", "accession": "GCA_900199375.1", "taxid": 1335613, "species_taxid": 1335613, "relation_to_type": "type", "validated": true, "ani": 77.1961, "matched_fragments": 123, "total_fragments": 639, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonibacter urolithinfaciens", "strain": "strain=DSM 27213", "accession": "GCA_003788975.1", "taxid": 1335613, "species_taxid": 1335613, "relation_to_type": "type", "validated": true, "ani": 77.168, "matched_fragments": 123, "total_fragments": 639, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonibacter pamelaeae", "strain": "strain=7-10-1-bT", "accession": "GCA_000210055.1", "taxid": 471189, "species_taxid": 471189, "relation_to_type": "type", "validated": true, "ani": 77.1619, "matched_fragments": 124, "total_fragments": 639, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Slackia piriformis", "strain": "strain=YIT 12062", "accession": "GCA_000296445.1", "taxid": 626934, "species_taxid": 626934, "relation_to_type": "type", "validated": true, "ani": 77.1565, "matched_fragments": 71, "total_fragments": 639, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Berryella 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"strain=Marseille-P2849", "accession": "GCA_900199545.1", "taxid": 1852371, "species_taxid": 1852371, "relation_to_type": "type", "validated": true, "ani": 76.9152, "matched_fragments": 93, "total_fragments": 639, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Denitrobacterium detoxificans", "strain": "strain=NPOH1", "accession": "GCA_001643775.1", "taxid": 79604, "species_taxid": 79604, "relation_to_type": "type", "validated": true, "ani": 76.8865, "matched_fragments": 110, "total_fragments": 639, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Slackia equolifaciens", "strain": "strain=DSM 24851", "accession": "GCA_003725995.1", "taxid": 498718, "species_taxid": 498718, "relation_to_type": "type", "validated": true, "ani": 76.8743, "matched_fragments": 94, "total_fragments": 639, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": 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