{
    "type": "genome",
    "identifier": "GCF_000006685.1",
    "organism": "Chlamydia muridarum str. Nigg",
    "title": "Chlamydia muridarum str. Nigg",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "TIGR",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000006685.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02603994",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "243161",
        "species_taxid": "83560",
        "organism_name": "Chlamydia muridarum str. Nigg",
        "infraspecific_name": "strain=Nigg",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2003/03/26",
        "asm_name": "ASM668v1",
        "asm_submitter": "TIGR",
        "gbrs_paired_asm": "GCA_000006685.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/685/GCF_000006685.1_ASM668v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1080451",
        "genome_size_ungapped": "1080451",
        "gc_percent": "40.500000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000006685.1-RS_2024_03_27",
        "annotation_date": "2024-03-27",
        "total_gene_count": "942",
        "protein_coding_gene_count": "890",
        "non_coding_gene_count": "46",
        "pubmed_id": "10684935"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2003-03-26",
    "dateModified": "2003-03-26",
    "datePublished": "2003-03-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Chlamydia muridarum str. Nigg"
        ],
        "sample_taxid": [
            "243161"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.306 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1080451",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "1072950",
        "N50 (bp)": "1072950",
        "Gap Ratio (%)": "0.000185",
        "GCcontent (%)": "40.3",
        "Number of CDSs": "896",
        "Average Protein Length": "356.0",
        "Coding Ratio (%)": "88.6",
        "Number of rRNAs": "6",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Chlamydia muridarum",
                "strain": "strain=Nigg",
                "accession": "GCA_002998035.1",
                "taxid": 83560,
                "species_taxid": 83560,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.996,
                "matched_fragments": 356,
                "total_fragments": 359,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Chlamydia muridarum",
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                "accession": "GCA_002997975.1",
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                "species_taxid": 83560,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9957,
                "matched_fragments": 356,
                "total_fragments": 359,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Chlamydia muridarum",
                "strain": "strain=Nigg",
                "accession": "GCA_002998015.1",
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                "species_taxid": 83560,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Chlamydia muridarum",
                "strain": "strain=Nigg",
                "accession": "GCA_002997955.1",
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                "species_taxid": 83560,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.992,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Chlamydia muridarum",
                "strain": "strain=Nigg",
                "accession": "GCA_000174975.1",
                "taxid": 83560,
                "species_taxid": 83560,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9913,
                "matched_fragments": 354,
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                "ani_threshold": 95,
                "status": "conclusive"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000006685.1",
                "gtdb_species": "s__Chlamydia muridarum",
                "ani": 100.0,
                "matched_fragments": 359,
                "total_fragments": 359,
                "gtdb_taxonomy": "d__Bacteria;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;g__Chlamydia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "98.97",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 29,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900169085.1",
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                "matched_fragments": 288,
                "total_fragments": 359,
                "gtdb_taxonomy": "d__Bacteria;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;g__Chlamydia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.47",
                "min_intra_species_ani": "97.62",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 33,
                "status": "-"
            },
            {
                "accession": "GCF_000012125.1",
                "gtdb_species": "s__Chlamydia trachomatis",
                "ani": 81.8872,
                "matched_fragments": 283,
                "total_fragments": 359,
                "gtdb_taxonomy": "d__Bacteria;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;g__Chlamydia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.35",
                "min_intra_species_ani": "98.96",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 178,
                "status": "-"
            },
            {
                "accession": "GCA_017472245.1",
                "gtdb_species": "s__Chlamydia sp017472245",
                "ani": 80.5865,
                "matched_fragments": 250,
                "total_fragments": 359,
                "gtdb_taxonomy": "d__Bacteria;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;g__Chlamydia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": 0.311,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 1075065.476,
        "gc_content": 40.12,
        "coding_genes": 897.286,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 37.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Chlamydia",
        "muridarum",
        "str.",
        "Nigg"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}