{ "type": "genome", "identifier": "GCF_000006945.2", "organism": "Salmonella enterica subsp. enterica serovar Typhimurium str. LT2", "title": "Salmonella enterica subsp. enterica serovar Typhimurium str. LT2", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Washington University Genome Sequencing Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000006945.2", "bioproject": "PRJNA57799", "biosample": "SAMN02604315", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "99287", "species_taxid": "28901", "organism_name": "Salmonella enterica subsp. enterica serovar Typhimurium str. LT2", "infraspecific_name": "strain=LT2", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/01/13", "asm_name": "ASM694v2", "asm_submitter": "Washington University Genome Sequencing Center", "gbrs_paired_asm": "GCA_000006945.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/945/GCF_000006945.2_ASM694v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4951383", "genome_size_ungapped": "4951383", "gc_percent": "52.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "Annotation submitted by NCBI RefSeq", "annotation_date": "2022-09-08", "total_gene_count": "4717", "protein_coding_gene_count": "4554", "non_coding_gene_count": "118", "pubmed_id": "11677609" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-01-13", "dateModified": "2016-01-13", "datePublished": "2016-01-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" ], "sample_taxid": [ "99287" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.403 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4951383", "Number of Sequences": "2", "Longest Sequences (bp)": "4857450", "N50 (bp)": "4857450", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.2", "Number of CDSs": "4620", "Average Protein Length": "310.3", "Coding Ratio (%)": "86.9", "Number of rRNAs": "22", "Number of tRNAs": "86", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Salmonella enterica subsp. enterica", "strain": "strain=PartC-Senterica-RM8376", 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1261, "total_fragments": 1650, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.43", "min_intra_species_ani": "98.73", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 32, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": -0.36, "growth_tmp": 36.956, "optimum_tmp": 36.989, "optimum_ph": null, "genome_size": 4811759.817, "gc_content": 51.852, "coding_genes": 4628.245, "rRNA16S_genes": 6.931, "tRNA_genes": 83.616, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, 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