{
    "type": "genome",
    "identifier": "GCF_000006985.1",
    "organism": "Chlorobaculum tepidum TLS",
    "title": "Chlorobaculum tepidum TLS",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "TIGR",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000006985.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02604006",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "194439",
        "species_taxid": "1097",
        "organism_name": "Chlorobaculum tepidum TLS",
        "infraspecific_name": "strain=TLS",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2002/07/02",
        "asm_name": "ASM698v1",
        "asm_submitter": "TIGR",
        "gbrs_paired_asm": "GCA_000006985.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/985/GCF_000006985.1_ASM698v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2154946",
        "genome_size_ungapped": "2154946",
        "gc_percent": "56.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000006985.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "2094",
        "protein_coding_gene_count": "1988",
        "non_coding_gene_count": "59",
        "pubmed_id": "12093901"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2002-07-02",
    "dateModified": "2002-07-02",
    "datePublished": "2002-07-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Chlorobaculum tepidum TLS"
        ],
        "sample_taxid": [
            "194439"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.607 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2154946",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2154946",
        "N50 (bp)": "2154946",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "56.5",
        "Number of CDSs": "2007",
        "Average Protein Length": "310.3",
        "Coding Ratio (%)": "86.7",
        "Number of rRNAs": "4",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Chlorobaculum tepidum",
                "strain": "strain=TLS",
                "accession": "GCA_000006985.1",
                "taxid": 1097,
                "species_taxid": 1097,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 718,
                "total_fragments": 718,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Chlorobaculum thiosulfatiphilum",
                "strain": "strain=DSM 249",
                "accession": "GCA_006265165.1",
                "taxid": 115852,
                "species_taxid": 115852,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.0345,
                "matched_fragments": 592,
                "total_fragments": 718,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlorobaculum limnaeum",
                "strain": "strain=DSM 1677",
                "accession": "GCA_001747405.1",
                "taxid": 274537,
                "species_taxid": 274537,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.0286,
                "matched_fragments": 610,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pelodictyon luteolum",
                "strain": "strain=DSM 273",
                "accession": "GCA_000012485.1",
                "taxid": 1100,
                "species_taxid": 1100,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8244,
                "matched_fragments": 171,
                "total_fragments": 718,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlorobium limicola",
                "strain": "strain=DSM 245",
                "accession": "GCA_000020465.1",
                "taxid": 1092,
                "species_taxid": 1092,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.521,
                "matched_fragments": 115,
                "total_fragments": 718,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlorobium phaeobacteroides",
                "strain": "strain=DSM 266",
                "accession": "GCA_000015125.1",
                "taxid": 1096,
                "species_taxid": 1096,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4871,
                "matched_fragments": 68,
                "total_fragments": 718,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pelodictyon phaeoclathratiforme",
                "strain": "strain=BU-1",
                "accession": "GCA_000020645.1",
                "taxid": 34090,
                "species_taxid": 34090,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1514,
                "matched_fragments": 74,
                "total_fragments": 718,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prosthecochloris vibrioformis",
                "strain": "strain=DSM 260",
                "accession": "GCA_006265245.1",
                "taxid": 1098,
                "species_taxid": 1098,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.893,
                "matched_fragments": 77,
                "total_fragments": 718,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000006985.1",
                "gtdb_species": "s__Chlorobaculum tepidum",
                "ani": 100.0,
                "matched_fragments": 718,
                "total_fragments": 718,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_001602925.1",
                "gtdb_species": "s__Chlorobaculum sp001602925",
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                "total_fragments": 718,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004118635.1",
                "gtdb_species": "s__Chlorobaculum sp004118635",
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                "total_fragments": 718,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001747405.1",
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                "ani": 86.0751,
                "matched_fragments": 610,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_006265165.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobaculum",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016931495.1",
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                "total_fragments": 718,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000020505.1",
                "gtdb_species": "s__Chlorobaculum parvum_A",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
        "cell_length": 0.113,
        "doubling_h": 0.283,
        "growth_tmp": 46.225,
        "optimum_tmp": 48.0,
        "optimum_ph": 5.25,
        "genome_size": 2154946.8,
        "gc_content": 56.5,
        "coding_genes": 2245.0,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 50.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Chlorobaculum",
        "tepidum",
        "TLS"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}