{
    "type": "genome",
    "identifier": "GCF_000007025.1",
    "organism": "Rickettsia conorii str. Malish 7",
    "title": "Rickettsia conorii str. Malish 7",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "CNRS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000007025.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02603141",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "272944",
        "species_taxid": "781",
        "organism_name": "Rickettsia conorii str. Malish 7",
        "infraspecific_name": "strain=Malish 7",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2002/11/25",
        "asm_name": "ASM702v1",
        "asm_submitter": "CNRS",
        "gbrs_paired_asm": "GCA_000007025.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/025/GCF_000007025.1_ASM702v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1268755",
        "genome_size_ungapped": "1268755",
        "gc_percent": "32.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000007025.1-RS_2025_01_08",
        "annotation_date": "2025-01-08",
        "total_gene_count": "1468",
        "protein_coding_gene_count": "1331",
        "non_coding_gene_count": "40",
        "pubmed_id": "11030655;11557893"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2002-11-25",
    "dateModified": "2002-11-25",
    "datePublished": "2002-11-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rickettsia conorii str. Malish 7"
        ],
        "sample_taxid": [
            "272944"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.352 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1268755",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "1268755",
        "N50 (bp)": "1268755",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "32.4",
        "Number of CDSs": "1375",
        "Average Protein Length": "244.5",
        "Coding Ratio (%)": "79.5",
        "Number of rRNAs": "3",
        "Number of tRNAs": "33",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Rickettsia conorii",
                "strain": "strain=Malish 7",
                "accession": "GCA_000007025.1",
                "taxid": 781,
                "species_taxid": 781,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 422,
                "total_fragments": 422,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Rickettsia conorii subsp. caspia",
                "strain": "strain=A-167",
                "accession": "GCA_000261325.1",
                "taxid": 302011,
                "species_taxid": 781,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.1551,
                "matched_fragments": 405,
                "total_fragments": 422,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Rickettsia conorii subsp. israelensis",
                "strain": "strain=ISTT CDC1",
                "accession": "GCA_000263815.1",
                "taxid": 45258,
                "species_taxid": 781,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.0571,
                "matched_fragments": 395,
                "total_fragments": 422,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Rickettsia sibirica subsp. mongolitimonae",
                "strain": "strain=HA-91",
                "accession": "GCA_000247625.2",
                "taxid": 45261,
                "species_taxid": 35793,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 98.9172,
                "matched_fragments": 395,
                "total_fragments": 422,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Rickettsia sibirica",
                "strain": "strain=246",
                "accession": "GCA_000166935.1",
                "taxid": 35793,
                "species_taxid": 35793,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 98.9164,
                "matched_fragments": 411,
                "total_fragments": 422,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Rickettsia rickettsii",
                "strain": "strain=Iowa",
                "accession": "GCA_001950995.1",
                "taxid": 783,
                "species_taxid": 783,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 98.2669,
                "matched_fragments": 412,
                "total_fragments": 422,
                "ani_threshold": 95,
                "status": "inconclusive"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001951015.1",
                "gtdb_species": "s__Rickettsia rickettsii",
                "ani": 98.2669,
                "matched_fragments": 412,
                "total_fragments": 422,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;g__Rickettsia",
                "ani_circumscription_radius": 96.8762,
                "mean_intra_species_ani": "98.06",
                "min_intra_species_ani": "97.35",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 75,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_000284075.1",
                "gtdb_species": "s__Rickettsia rhipicephali",
                "ani": 97.0864,
                "matched_fragments": 407,
                "total_fragments": 422,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;g__Rickettsia",
                "ani_circumscription_radius": 96.8762,
                "mean_intra_species_ani": "97.74",
                "min_intra_species_ani": "97.12",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 15,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_000751075.1",
                "gtdb_species": "s__Rickettsia tamurae",
                "ani": 94.2418,
                "matched_fragments": 383,
                "total_fragments": 422,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;g__Rickettsia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.18",
                "min_intra_species_ani": "96.01",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_000255355.1",
                "gtdb_species": "s__Rickettsia helvetica_A",
                "ani": 93.2093,
                "matched_fragments": 390,
                "total_fragments": 422,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;g__Rickettsia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.64",
                "min_intra_species_ani": "98.64",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000825685.1",
                "gtdb_species": "s__Rickettsia hoogstraalii",
                "ani": 93.18,
                "matched_fragments": 396,
                "total_fragments": 422,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;g__Rickettsia",
                "ani_circumscription_radius": 95.8684,
                "mean_intra_species_ani": "99.00",
                "min_intra_species_ani": "99.00",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_000012145.1",
                "gtdb_species": "s__Rickettsia felis",
                "ani": 92.7843,
                "matched_fragments": 393,
                "total_fragments": 422,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;g__Rickettsia",
                "ani_circumscription_radius": 95.8797,
                "mean_intra_species_ani": "98.88",
                "min_intra_species_ani": "96.13",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_016743795.1",
                "gtdb_species": "s__Rickettsia tillamookensis",
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                "matched_fragments": 402,
                "total_fragments": 422,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;g__Rickettsia",
                "ani_circumscription_radius": 95.1029,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000828125.2",
                "gtdb_species": "s__Rickettsia asembonensis",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;g__Rickettsia",
                "ani_circumscription_radius": 95.8797,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000273745.1",
                "gtdb_species": "s__Rickettsia australis",
                "ani": 91.933,
                "matched_fragments": 366,
                "total_fragments": 422,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;g__Rickettsia",
                "ani_circumscription_radius": 95.501,
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                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.42,
        "cell_length": -0.048,
        "doubling_h": 0.602,
        "growth_tmp": 37.0,
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        "optimum_ph": 7.283,
        "genome_size": 1263301.0,
        "gc_content": 32.4,
        "coding_genes": 1299.667,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 33.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    "_genome_taxon": [
        "Rickettsia",
        "conorii",
        "str.",
        "Malish",
        "7"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}