{
    "type": "genome",
    "identifier": "GCF_000007345.1",
    "organism": "Methanosarcina acetivorans C2A",
    "title": "Methanosarcina acetivorans C2A",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Broad Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000007345.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03081414",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "188937",
        "species_taxid": "2214",
        "organism_name": "Methanosarcina acetivorans C2A",
        "infraspecific_name": "strain=C2A",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2002/04/03",
        "asm_name": "ASM734v1",
        "asm_submitter": "Broad Institute",
        "gbrs_paired_asm": "GCA_000007345.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/345/GCF_000007345.1_ASM734v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "5751492",
        "genome_size_ungapped": "5751492",
        "gc_percent": "42.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000007345.1-RS_2024_10_21",
        "annotation_date": "2024-10-21",
        "total_gene_count": "4933",
        "protein_coding_gene_count": "4702",
        "non_coding_gene_count": "68",
        "pubmed_id": "11932238"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2002-04-03",
    "dateModified": "2002-04-03",
    "datePublished": "2002-04-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methanosarcina acetivorans C2A"
        ],
        "sample_taxid": [
            "188937"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.615 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 4.55,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5751492",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "5751492",
        "N50 (bp)": "5751492",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.7",
        "Number of CDSs": "4816",
        "Average Protein Length": "294.4",
        "Coding Ratio (%)": "73.9",
        "Number of rRNAs": "9",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "6"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Methanosarcina acetivorans",
                "strain": "strain=C2A",
                "accession": "GCA_000007345.1",
                "taxid": 2214,
                "species_taxid": 2214,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1917,
                "total_fragments": 1917,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Methanosarcina siciliae",
                "strain": "strain=T4/M",
                "accession": "GCA_000970085.1",
                "taxid": 38027,
                "species_taxid": 38027,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.3974,
                "matched_fragments": 1383,
                "total_fragments": 1917,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanosarcina horonobensis",
                "strain": "strain=HB-1",
                "accession": "GCA_000970285.1",
                "taxid": 418008,
                "species_taxid": 418008,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4345,
                "matched_fragments": 1094,
                "total_fragments": 1917,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanosarcina mazei",
                "strain": "strain=S-6",
                "accession": "GCA_000970205.1",
                "taxid": 2209,
                "species_taxid": 2209,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 81.3885,
                "matched_fragments": 871,
                "total_fragments": 1917,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanosarcina vacuolata",
                "strain": "strain=Z-761",
                "accession": "GCA_000969905.1",
                "taxid": 2215,
                "species_taxid": 2215,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1647,
                "matched_fragments": 623,
                "total_fragments": 1917,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanosarcina flavescens",
                "strain": "strain=E03.2",
                "accession": "GCA_001304615.2",
                "taxid": 1715806,
                "species_taxid": 1715806,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8107,
                "matched_fragments": 483,
                "total_fragments": 1917,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 4.55,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000007345.1",
                "gtdb_species": "s__Methanosarcina acetivorans",
                "ani": 100.0,
                "matched_fragments": 1917,
                "total_fragments": 1917,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanosarcina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000970085.1",
                "gtdb_species": "s__Methanosarcina siciliae",
                "ani": 91.4233,
                "matched_fragments": 1381,
                "total_fragments": 1917,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanosarcina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.67",
                "min_intra_species_ani": "98.18",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000979455.1",
                "gtdb_species": "s__Methanosarcina sp000979455",
                "ani": 84.5996,
                "matched_fragments": 1007,
                "total_fragments": 1917,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanosarcina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.06",
                "min_intra_species_ani": "95.85",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_000969965.1",
                "gtdb_species": "s__Methanosarcina sp000969965",
                "ani": 84.4701,
                "matched_fragments": 1045,
                "total_fragments": 1917,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanosarcina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.47",
                "min_intra_species_ani": "99.47",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000970265.1",
                "gtdb_species": "s__Methanosarcina lacustris",
                "ani": 83.5025,
                "matched_fragments": 965,
                "total_fragments": 1917,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanosarcina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000970285.1",
                "gtdb_species": "s__Methanosarcina horonobensis",
                "ani": 82.4355,
                "matched_fragments": 1093,
                "total_fragments": 1917,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanosarcina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.79",
                "min_intra_species_ani": "99.79",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.176,
        "cell_length": 0.176,
        "doubling_h": 0.816,
        "growth_tmp": 38.55,
        "optimum_tmp": 38.125,
        "optimum_ph": 6.625,
        "genome_size": 5751491.6,
        "gc_content": 42.7,
        "coding_genes": 4572.667,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 56.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Methanosarcina",
        "acetivorans",
        "C2A"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}