{ "type": "genome", "identifier": "GCF_000008045.1", "organism": "Rickettsia typhi str. Wilmington", "title": "Rickettsia typhi str. Wilmington", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Human Genome Sequencing Center, Baylor College of Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000008045.1", "bioproject": "PRJNA224116", "biosample": "SAMN02603327", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "257363", "species_taxid": "785", "organism_name": "Rickettsia typhi str. 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Wilmington" ], "sample_taxid": [ "257363" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.306 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1111496", "Number of Sequences": "1", "Longest Sequences (bp)": "1111496", "N50 (bp)": "1111496", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "28.9", "Number of CDSs": "850", "Average Protein Length": "327.3", "Coding Ratio (%)": "75.1", "Number of rRNAs": "3", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rickettsia typhi", "strain": "strain=Wilmington", "accession": 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"type", "validated": true, "ani": 86.3024, "matched_fragments": 323, "total_fragments": 370, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rickettsia sibirica subsp. mongolitimonae", "strain": "strain=HA-91", "accession": "GCA_000247625.2", "taxid": 45261, "species_taxid": 35793, "relation_to_type": "suspected-type", "validated": true, "ani": 86.2128, "matched_fragments": 322, "total_fragments": 370, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rickettsia hoogstraalii", "strain": "strain=Croatica", "accession": "GCA_000825685.1", "taxid": 467174, "species_taxid": 467174, "relation_to_type": "type", "validated": true, "ani": 86.2114, "matched_fragments": 339, "total_fragments": 370, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rickettsia conorii subsp. raoultii", "strain": "strain=Khabarovsk", "accession": "GCA_000940955.1", "taxid": 369822, "species_taxid": 781, "relation_to_type": "type", "validated": 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