{ "type": "genome", "identifier": "GCF_000009365.1", "organism": "Alcanivorax borkumensis SK2", "title": "Alcanivorax borkumensis SK2", "description": "na", "data type": "Genome sequencing and assembly", "organization": "German Research Centre for Biotechnology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000009365.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3138202", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "393595", "species_taxid": "59754", "organism_name": "Alcanivorax borkumensis SK2", "infraspecific_name": "strain=SK2", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2006/07/24", "asm_name": "ASM936v1", "asm_submitter": "German Research Centre for Biotechnology", "gbrs_paired_asm": "GCA_000009365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/365/GCF_000009365.1_ASM936v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3120143", "genome_size_ungapped": "3120143", "gc_percent": "54.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000009365.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "2833", "protein_coding_gene_count": "2761", "non_coding_gene_count": "55", "pubmed_id": "16878126" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2006-07-24", "dateModified": "2006-07-24", "datePublished": "2006-07-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Alcanivorax borkumensis SK2" ], "sample_taxid": [ "393595" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.888 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3120143", "Number of Sequences": "1", "Longest Sequences (bp)": "3120143", "N50 (bp)": "3120143", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.7", "Number of CDSs": "2828", "Average Protein Length": "321.4", "Coding Ratio (%)": "87.4", "Number of rRNAs": "9", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alcanivorax borkumensis", "strain": "strain=SK2", "accession": "GCA_000009365.1", "taxid": 59754, "species_taxid": 59754, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1039, "total_fragments": 1040, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Alcanivorax jadensis", "strain": "strain=T9", "accession": "GCA_000756655.1", "taxid": 64988, "species_taxid": 64988, "relation_to_type": "type", "validated": true, "ani": 80.2399, "matched_fragments": 538, "total_fragments": 1040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax profundi", "strain": "strain=MTEO17", "accession": "GCA_003597125.1", "taxid": 2338368, "species_taxid": 2338368, "relation_to_type": "type", "validated": true, "ani": 79.6208, "matched_fragments": 472, "total_fragments": 1040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax nanhaiticus", "strain": "strain=19-m-6", "accession": "GCA_000756665.1", "taxid": 1177154, "species_taxid": 1177154, "relation_to_type": "type", "validated": true, "ani": 79.1831, "matched_fragments": 459, "total_fragments": 1040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax sediminis", "strain": "strain=PA15-N-34", "accession": "GCA_009601165.1", "taxid": 2663008, "species_taxid": 2663008, "relation_to_type": "type", "validated": true, "ani": 79.1571, "matched_fragments": 435, "total_fragments": 1040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax hongdengensis", "strain": "strain=A-11-3", "accession": "GCA_000300995.1", "taxid": 519051, "species_taxid": 519051, "relation_to_type": "type", "validated": true, "ani": 79.0803, "matched_fragments": 435, "total_fragments": 1040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax gelatiniphagus", "strain": "strain=MEBiC 08158", "accession": "GCA_005938655.1", "taxid": 1194167, "species_taxid": 1194167, "relation_to_type": "type", "validated": true, "ani": 77.8774, "matched_fragments": 251, "total_fragments": 1040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax marinus", "strain": 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"N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000300995.1", "gtdb_species": "s__Alcanivorax hongdengensis", "ani": 79.0803, "matched_fragments": 435, "total_fragments": 1040, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.342, "cell_length": 0.074, "doubling_h": 0.303, "growth_tmp": 24.5, "optimum_tmp": 28.55, "optimum_ph": 7.333, "genome_size": 3120142.4, "gc_content": 54.7, "coding_genes": 2749.667, "rRNA16S_genes": 3.0, "tRNA_genes": 42.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, 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