{
    "type": "genome",
    "identifier": "GCF_000009625.1",
    "organism": "Mesorhizobium japonicum MAFF 303099",
    "title": "Mesorhizobium japonicum MAFF 303099",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Kazusa",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000009625.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00061086",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "266835",
        "species_taxid": "2066070",
        "organism_name": "Mesorhizobium japonicum MAFF 303099",
        "infraspecific_name": "strain=MAFF 303099",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2004/05/11",
        "asm_name": "ASM962v1",
        "asm_submitter": "Kazusa",
        "gbrs_paired_asm": "GCA_000009625.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/625/GCF_000009625.1_ASM962v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7596297",
        "genome_size_ungapped": "7596297",
        "gc_percent": "62.500000",
        "replicon_count": "3",
        "scaffold_count": "3",
        "contig_count": "3",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2023-04-24",
        "total_gene_count": "7445",
        "protein_coding_gene_count": "7146",
        "non_coding_gene_count": "62",
        "pubmed_id": "11214968"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2004-05-11",
    "dateModified": "2004-05-11",
    "datePublished": "2004-05-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Mesorhizobium japonicum MAFF 303099"
        ],
        "sample_taxid": [
            "266835"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "2.104 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7596297",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "7036071",
        "N50 (bp)": "7036071",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.5",
        "Number of CDSs": "7489",
        "Average Protein Length": "290.7",
        "Coding Ratio (%)": "86.0",
        "Number of rRNAs": "6",
        "Number of tRNAs": "55",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Mesorhizobium japonicum",
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                "accession": "GCA_000009625.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Mesorhizobium jarvisii",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "ani_threshold": 95,
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            {
                "organism_name": "Mesorhizobium carmichaelinearum",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesorhizobium comanense",
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                "species_taxid": 2502215,
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                "status": "below_threshold"
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            {
                "organism_name": "Mesorhizobium onobrychidis",
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                "accession": "GCA_024707545.1",
                "taxid": 2775404,
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                "validated": true,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Pseudaminobacter soli",
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                "accession": "GCA_018310375.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitratireductor arenosus",
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                "accession": "GCA_009742725.1",
                "taxid": 2682096,
                "species_taxid": 2682096,
                "relation_to_type": "type",
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                "matched_fragments": 638,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudaminobacter soli",
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                "ani": 79.0537,
                "matched_fragments": 732,
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                "status": "below_threshold"
            }
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        "cc_result": {
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                "accession": "GCF_000009625.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium",
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            {
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        ]
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    "_bac2feature": {
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    "_genome_taxon": [
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}