{
    "type": "genome",
    "identifier": "GCF_000009905.1",
    "organism": "Symbiobacterium thermophilum IAM 14863",
    "title": "Symbiobacterium thermophilum IAM 14863",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Kitasato Institute for Life Sciences, Japan",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000009905.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00061067",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "292459",
        "species_taxid": "2734",
        "organism_name": "Symbiobacterium thermophilum IAM 14863",
        "infraspecific_name": "strain=IAM14863",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2004/09/02",
        "asm_name": "ASM990v1",
        "asm_submitter": "Kitasato Institute for Life Sciences, Japan",
        "gbrs_paired_asm": "GCA_000009905.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/905/GCF_000009905.1_ASM990v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3566135",
        "genome_size_ungapped": "3566135",
        "gc_percent": "68.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000009905.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "3384",
        "protein_coding_gene_count": "3233",
        "non_coding_gene_count": "119",
        "pubmed_id": "15383646"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2004-09-02",
    "dateModified": "2004-09-02",
    "datePublished": "2004-09-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Symbiobacterium thermophilum IAM 14863"
        ],
        "sample_taxid": [
            "292459"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.965 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3566135",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3566135",
        "N50 (bp)": "3566135",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "68.7",
        "Number of CDSs": "3368",
        "Average Protein Length": "307.3",
        "Coding Ratio (%)": "87.1",
        "Number of rRNAs": "18",
        "Number of tRNAs": "103",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Symbiobacterium thermophilum",
                "strain": "strain=IAM14863",
                "accession": "GCA_000009905.1",
                "taxid": 2734,
                "species_taxid": 2734,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1188,
                "total_fragments": 1188,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Symbiobacterium terraclitae",
                "strain": "strain=DSM 27138",
                "accession": "GCA_017874315.1",
                "taxid": 557451,
                "species_taxid": 557451,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.7524,
                "matched_fragments": 826,
                "total_fragments": 1188,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermaerobacter marianensis",
                "strain": "strain=DSM 12885",
                "accession": "GCA_000184705.1",
                "taxid": 73919,
                "species_taxid": 73919,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7433,
                "matched_fragments": 144,
                "total_fragments": 1188,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermaerobacter subterraneus",
                "strain": "strain=DSM 13965",
                "accession": "GCA_000183545.3",
                "taxid": 175696,
                "species_taxid": 175696,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5236,
                "matched_fragments": 141,
                "total_fragments": 1188,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermobacillus composti",
                "strain": "strain=KWC4",
                "accession": "GCA_000227705.3",
                "taxid": 377615,
                "species_taxid": 377615,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1749,
                "matched_fragments": 55,
                "total_fragments": 1188,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas granuli",
                "strain": "strain=Gr-4",
                "accession": "GCA_007795095.1",
                "taxid": 1176533,
                "species_taxid": 1176533,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.2525,
                "matched_fragments": 64,
                "total_fragments": 1188,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Inquilinus limosus",
                "strain": "strain=DSM 16000",
                "accession": "GCA_000423185.1",
                "taxid": 171674,
                "species_taxid": 171674,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.2449,
                "matched_fragments": 157,
                "total_fragments": 1188,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmatirosa kalamazoonensis",
                "strain": "strain=KBS708",
                "accession": "GCA_000522985.1",
                "taxid": 861299,
                "species_taxid": 861299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0436,
                "matched_fragments": 93,
                "total_fragments": 1188,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudonocardia cypriaca",
                "strain": "strain=DSM 45511",
                "accession": "GCA_006717045.1",
                "taxid": 882449,
                "species_taxid": 882449,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0325,
                "matched_fragments": 114,
                "total_fragments": 1188,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinokineospora fastidiosa",
                "strain": "strain=JCM 3276",
                "accession": "GCA_014648415.1",
                "taxid": 1816,
                "species_taxid": 1816,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9849,
                "matched_fragments": 120,
                "total_fragments": 1188,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces nymphaeiformis",
                "strain": "strain=SFB5A",
                "accession": "GCA_014203895.1",
                "taxid": 2663842,
                "species_taxid": 2663842,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9538,
                "matched_fragments": 139,
                "total_fragments": 1188,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura rifamycini",
                "strain": "strain=DSM 43936",
                "accession": "GCA_000425065.1",
                "taxid": 31962,
                "species_taxid": 31962,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9468,
                "matched_fragments": 154,
                "total_fragments": 1188,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces melanogenes",
                "strain": "strain=JCM 4398",
                "accession": "GCA_014649795.1",
                "taxid": 67326,
                "species_taxid": 67326,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.882,
                "matched_fragments": 129,
                "total_fragments": 1188,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000009905.1",
                "gtdb_species": "s__Symbiobacterium thermophilum",
                "ani": 100.0,
                "matched_fragments": 1188,
                "total_fragments": 1188,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_E;c__Symbiobacteriia;o__Symbiobacteriales;f__Symbiobacteriaceae;g__Symbiobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_003242675.1",
                "gtdb_species": "s__Symbiobacterium sp003242675",
                "ani": 86.7688,
                "matched_fragments": 740,
                "total_fragments": 1188,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_E;c__Symbiobacteriia;o__Symbiobacteriales;f__Symbiobacteriaceae;g__Symbiobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017874315.1",
                "gtdb_species": "s__Symbiobacterium terraclitae",
                "ani": 82.7126,
                "matched_fragments": 830,
                "total_fragments": 1188,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_E;c__Symbiobacteriia;o__Symbiobacteriales;f__Symbiobacteriaceae;g__Symbiobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003242505.1",
                "gtdb_species": "s__ZC4RG38 sp003242505",
                "ani": 77.1022,
                "matched_fragments": 204,
                "total_fragments": 1188,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_E;c__Symbiobacteriia;o__Symbiobacteriales;f__ZC4RG38;g__ZC4RG38",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000183545.2",
                "gtdb_species": "s__Thermaerobacter subterraneus",
                "ani": 76.5225,
                "matched_fragments": 142,
                "total_fragments": 1188,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_E;c__Thermaerobacteria;o__Thermaerobacterales;f__Thermaerobacteraceae;g__Thermaerobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.08",
                "min_intra_species_ani": "95.08",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902809825.1",
                "gtdb_species": "s__R501 sp902809825",
                "ani": 75.5119,
                "matched_fragments": 80,
                "total_fragments": 1188,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_E;c__Sulfobacillia;o__Sulfobacillales;f__R501;g__R501",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016615955.1",
                "gtdb_species": "s__Luteimonas sp016615955",
                "ani": 75.2736,
                "matched_fragments": 78,
                "total_fragments": 1188,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.39",
                "min_intra_species_ani": "98.78",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_018606725.1",
                "gtdb_species": "s__JAGYID01 sp018606725",
                "ani": 74.9948,
                "matched_fragments": 63,
                "total_fragments": 1188,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Mor1;o__Gp22-AA2;f__Gp22-AA2;g__JAGYID01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003558435.1",
                "gtdb_species": "s__PWLR01 sp003558435",
                "ani": 74.8421,
                "matched_fragments": 55,
                "total_fragments": 1188,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nitriliruptorales;f__Nitriliruptoraceae;g__PWLR01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.63",
                "min_intra_species_ani": "99.63",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019239425.1",
                "gtdb_species": "s__QHXN01 sp019239425",
                "ani": 74.8397,
                "matched_fragments": 78,
                "total_fragments": 1188,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__QHXN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002753665.1",
                "gtdb_species": "s__DC0425bin3 sp002753665",
                "ani": 74.8112,
                "matched_fragments": 52,
                "total_fragments": 1188,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Magnetococcia;o__Magnetococcales;f__DC0425bin3;g__DC0425bin3",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": 0.227,
        "growth_tmp": 57.575,
        "optimum_tmp": 60.0,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Symbiobacterium",
        "thermophilum",
        "IAM",
        "14863"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}