{
    "type": "genome",
    "identifier": "GCF_000010425.1",
    "organism": "Bifidobacterium adolescentis ATCC 15703",
    "title": "Bifidobacterium adolescentis ATCC 15703",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Gifu University, Life Science Research Center, Japan",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000010425.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00061080",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "367928",
        "species_taxid": "1680",
        "organism_name": "Bifidobacterium adolescentis ATCC 15703",
        "infraspecific_name": "strain=ATCC 15703",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2006/12/05",
        "asm_name": "ASM1042v1",
        "asm_submitter": "Gifu University, Life Science Research Center, Japan",
        "gbrs_paired_asm": "GCA_000010425.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/425/GCF_000010425.1_ASM1042v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2089645",
        "genome_size_ungapped": "2089645",
        "gc_percent": "59.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000010425.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "1753",
        "protein_coding_gene_count": "1656",
        "non_coding_gene_count": "73",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2006-12-05",
    "dateModified": "2006-12-05",
    "datePublished": "2006-12-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bifidobacterium adolescentis ATCC 15703"
        ],
        "sample_taxid": [
            "367928"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.586 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2089645",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2089645",
        "N50 (bp)": "2089645",
        "Gap Ratio (%)": "0.000048",
        "GCcontent (%)": "59.2",
        "Number of CDSs": "1712",
        "Average Protein Length": "350.6",
        "Coding Ratio (%)": "86.2",
        "Number of rRNAs": "16",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Bifidobacterium adolescentis",
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                "accession": "GCA_000010425.1",
                "taxid": 1680,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 696,
                "total_fragments": 696,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium adolescentis",
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                "species_taxid": 1680,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.993,
                "matched_fragments": 685,
                "total_fragments": 696,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium ruminantium",
                "strain": "strain=DSM 6489",
                "accession": "GCA_000687635.1",
                "taxid": 78346,
                "species_taxid": 78346,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium ruminantium",
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                "accession": "GCA_000770925.1",
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                "species_taxid": 78346,
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                "ani": 88.637,
                "matched_fragments": 526,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium catenulatum subsp. kashiwanohense",
                "strain": "strain=DSM 21854",
                "accession": "GCA_000741605.1",
                "taxid": 630129,
                "species_taxid": 1686,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.9186,
                "matched_fragments": 471,
                "total_fragments": 696,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium catenulatum",
                "strain": "strain=DSM 16992",
                "accession": "GCA_000771025.1",
                "taxid": 1686,
                "species_taxid": 1686,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.8854,
                "matched_fragments": 432,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium catenulatum subsp. kashiwanohense",
                "strain": "strain=JCM 15439",
                "accession": "GCA_001042615.1",
                "taxid": 630129,
                "species_taxid": 1686,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.8316,
                "matched_fragments": 495,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium catenulatum subsp. kashiwanohense",
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                "ani": 84.7874,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium pseudocatenulatum",
                "strain": "strain=DSM 20438",
                "accession": "GCA_000771445.1",
                "taxid": 28026,
                "species_taxid": 28026,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.7034,
                "matched_fragments": 492,
                "total_fragments": 696,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium moukalabense",
                "strain": "strain=DSM 27321",
                "accession": "GCA_000522505.1",
                "taxid": 1333651,
                "species_taxid": 1333651,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.6241,
                "matched_fragments": 474,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium amazonense",
                "strain": "strain=MA1",
                "accession": "GCA_018555435.2",
                "taxid": 2809027,
                "species_taxid": 2809027,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4725,
                "matched_fragments": 373,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium pseudolongum subsp. pseudolongum",
                "strain": "strain=ATCC 25526",
                "accession": "GCA_022691205.1",
                "taxid": 31954,
                "species_taxid": 1694,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6018,
                "matched_fragments": 252,
                "total_fragments": 696,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_000010425.1",
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                "matched_fragments": 696,
                "total_fragments": 696,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
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                "status": "-"
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                "status": "-"
            },
            {
                "accession": "GCF_001042615.1",
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            {
                "accession": "GCF_000800455.1",
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                "mean_intra_species_ani": "N/A",
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                "accession": "GCF_001042595.1",
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    "_bac2feature": {
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    "_genome_taxon": [
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        "ATCC",
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}