{ "type": "genome", "identifier": "GCF_000011705.1", "organism": "Burkholderia mallei ATCC 23344", "title": "Burkholderia mallei ATCC 23344", "description": "na", "data type": "Genome sequencing and assembly", "organization": "TIGR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000011705.1", "bioproject": "PRJNA224116", "biosample": "SAMN02603987", "wgs_master": "na", "refseq_category": "na", "taxid": "243160", "species_taxid": "13373", "organism_name": "Burkholderia mallei ATCC 23344", "infraspecific_name": "strain=ATCC 23344", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2005/06/06", "asm_name": "ASM1170v1", "asm_submitter": "TIGR", "gbrs_paired_asm": "GCA_000011705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/011/705/GCF_000011705.1_ASM1170v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5835527", "genome_size_ungapped": "5835527", "gc_percent": "68.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000011705.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "5293", "protein_coding_gene_count": "4959", "non_coding_gene_count": "71", "pubmed_id": "15377793" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2005-06-06", "dateModified": "2005-06-06", "datePublished": "2005-06-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Burkholderia mallei ATCC 23344" ], "sample_taxid": [ "243160" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.542 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5835527", "Number of Sequences": "2", "Longest Sequences (bp)": "3510148", "N50 (bp)": "3510148", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.5", "Number of CDSs": "5070", "Average Protein Length": "320.8", "Coding Ratio (%)": "83.6", "Number of rRNAs": "7", "Number of tRNAs": "76", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Burkholderia mallei", "strain": "strain=ATCC 23344", "accession": "GCA_000011705.1", "taxid": 13373, "species_taxid": 13373, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1941, "total_fragments": 1945, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Burkholderia mallei", "strain": "strain=NCTC12938", "accession": "GCA_900446245.1", "taxid": 13373, "species_taxid": 13373, "relation_to_type": "type", "validated": true, "ani": 99.9984, "matched_fragments": 1938, "total_fragments": 1945, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Burkholderia pseudomallei", "strain": "strain=WRAIR 286", "accession": "GCA_006538545.1", "taxid": 28450, "species_taxid": 28450, "relation_to_type": "type", "validated": true, "ani": 99.2944, "matched_fragments": 1801, "total_fragments": 1945, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Burkholderia pseudomallei", "strain": "strain=ATCC 23343", "accession": "GCA_001182285.1", "taxid": 28450, "species_taxid": 28450, "relation_to_type": "type", "validated": true, "ani": 99.2936, "matched_fragments": 1855, "total_fragments": 1945, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Burkholderia thailandensis", "strain": "strain=E264; ATCC 700388", "accession": "GCA_000012365.1", "taxid": 57975, "species_taxid": 57975, "relation_to_type": "type", "validated": true, "ani": 92.8661, "matched_fragments": 1630, "total_fragments": 1945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ubonensis", "strain": "", "accession": "GCA_902499185.1", "taxid": 101571, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 85.7191, "matched_fragments": 1288, "total_fragments": 1945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ubonensis", "strain": "strain=LMG 20358", "accession": "GCA_902833085.1", "taxid": 101571, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 85.6417, "matched_fragments": 1346, "total_fragments": 1945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia anthina", "strain": "strain=DSM 16086", "accession": "GCA_016836725.1", "taxid": 179879, "species_taxid": 179879, "relation_to_type": "suspected-type", "validated": true, "ani": 84.6968, "matched_fragments": 1273, "total_fragments": 1945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia perseverans", "strain": "strain=INN12", "accession": "GCA_022870505.1", "taxid": 2615214, "species_taxid": 2615214, "relation_to_type": "type", "validated": true, "ani": 83.394, "matched_fragments": 1227, "total_fragments": 1945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia flava", "strain": "strain=LD6", "accession": "GCA_004359985.1", "taxid": 2547393, "species_taxid": 2547393, "relation_to_type": "type", "validated": true, "ani": 81.6644, "matched_fragments": 1035, "total_fragments": 1945, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000011705.1", "gtdb_species": "s__Burkholderia mallei", "ani": 100.0, "matched_fragments": 1942, "total_fragments": 1945, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.31", "min_intra_species_ani": "98.71", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.78", "num_clustered_genomes": 1780, "status": "conclusive" }, { "accession": "GCF_001462435.1", "gtdb_species": "s__Burkholderia humptydooensis", "ani": 93.1857, "matched_fragments": 1555, "total_fragments": 1945, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.52", "min_intra_species_ani": "99.18", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCF_000012365.1", "gtdb_species": "s__Burkholderia thailandensis", "ani": 92.8351, "matched_fragments": 1633, "total_fragments": 1945, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.58", "min_intra_species_ani": "98.83", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.93", "num_clustered_genomes": 53, "status": "-" }, { "accession": "GCF_001524625.2", "gtdb_species": "s__Burkholderia sp001524625", "ani": 91.2699, "matched_fragments": 1621, "total_fragments": 1945, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.38", "min_intra_species_ani": "99.33", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_000959365.1", "gtdb_species": "s__Burkholderia oklahomensis", "ani": 91.0569, "matched_fragments": 1659, "total_fragments": 1945, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.42", "min_intra_species_ani": "95.09", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.85", "num_clustered_genomes": 15, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.176, "doubling_h": -0.125, "growth_tmp": 37.0, "optimum_tmp": 33.887, "optimum_ph": 6.64, "genome_size": 5649159.01, "gc_content": 68.46, "coding_genes": 5402.846, "rRNA16S_genes": 4.0, "tRNA_genes": 56.143, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Burkholderia", "mallei", "ATCC", "23344" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }