{ "type": "genome", "identifier": "GCF_000013045.1", "organism": "Salinibacter ruber DSM 13855", "title": "Salinibacter ruber DSM 13855", "description": "na", "data type": "Genome sequencing and assembly", "organization": "TIGR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000013045.1", "bioproject": "PRJNA224116", "biosample": "SAMN02604045", "wgs_master": "na", "refseq_category": "na", "taxid": "309807", "species_taxid": "146919", "organism_name": "Salinibacter ruber DSM 13855", "infraspecific_name": "strain=DSM 13855; M31", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2005/12/20", "asm_name": "ASM1304v1", "asm_submitter": "TIGR", "gbrs_paired_asm": "GCA_000013045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/045/GCF_000013045.1_ASM1304v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly 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MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3587328", "Number of Sequences": "2", "Longest Sequences (bp)": "3551823", "N50 (bp)": "3551823", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.1", "Number of CDSs": "3055", "Average Protein Length": "332.7", "Coding Ratio (%)": "85.0", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Salinibacter ruber", "strain": "strain=DSM 13855; M31", "accession": "GCA_000013045.1", "taxid": 146919, "species_taxid": 146919, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1194, "total_fragments": 1194, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Salinibacter altiplanensis", "strain": "strain=AN15", "accession": "GCA_002894645.1", "taxid": 1803181, "species_taxid": 1803181, "relation_to_type": "type", "validated": true, "ani": 85.0965, "matched_fragments": 875, "total_fragments": 1194, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salisaeta longa", "strain": "strain=DSM 21114", "accession": "GCA_000419585.1", "taxid": 503170, "species_taxid": 503170, "relation_to_type": "type", "validated": true, "ani": 76.8391, "matched_fragments": 155, "total_fragments": 1194, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocaloribacter litoris", "strain": "strain=ISCAR-4553", "accession": "GCA_011682235.2", "taxid": 2558931, "species_taxid": 2558931, "relation_to_type": "type", "validated": true, "ani": 76.5369, "matched_fragments": 145, "total_fragments": 1194, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Longibacter salinarum", "strain": "strain=KCTC 52045", "accession": "GCA_002554795.1", "taxid": 1850348, "species_taxid": 1850348, "relation_to_type": "type", "validated": true, "ani": 76.5116, "matched_fragments": 114, "total_fragments": 1194, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Longimonas halophila", "strain": "strain=KCTC 42399", "accession": "GCA_002554705.1", "taxid": 1469170, "species_taxid": 1469170, "relation_to_type": "type", "validated": true, "ani": 76.4845, "matched_fragments": 124, "total_fragments": 1194, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivirga marina", "strain": "strain=SAORIC-28", "accession": "GCA_002283365.1", "taxid": 1196024, "species_taxid": 1196024, "relation_to_type": "type", "validated": true, "ani": 75.8775, "matched_fragments": 128, "total_fragments": 1194, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas alkaliterrae", "strain": "strain=DSM 25895", "accession": "GCA_014199195.1", "taxid": 1452450, 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"mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003022655.1", "gtdb_species": "s__Salinibacter sp003022655", "ani": 80.6731, "matched_fragments": 330, "total_fragments": 1194, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Rhodothermales;f__Salinibacteraceae;g__Salinibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002894685.1", "gtdb_species": "s__Salinibacter luteus", "ani": 79.6193, "matched_fragments": 487, "total_fragments": 1194, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Rhodothermales;f__Salinibacteraceae;g__Salinibacter", "ani_circumscription_radius": 96.2585, "mean_intra_species_ani": "N/A", 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"mean_intra_species_af": "0.67", "min_intra_species_af": "0.67", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003022435.1", "gtdb_species": "s__Salinibacter sp003022435", "ani": 78.4391, "matched_fragments": 310, "total_fragments": 1194, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Rhodothermales;f__Salinibacteraceae;g__Salinibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003023365.1", "gtdb_species": "s__Salinibacter sp003023365", "ani": 77.8724, "matched_fragments": 216, "total_fragments": 1194, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Rhodothermales;f__Salinibacteraceae;g__Salinibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": 1.146, "growth_tmp": 37.0, "optimum_tmp": 40.75, "optimum_ph": 8.75, "genome_size": 3670268.667, "gc_content": 64.438, "coding_genes": 2992.8, "rRNA16S_genes": 1.0, "tRNA_genes": 44.333, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Salinibacter", "ruber", "DSM", "13855" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }