{
    "type": "genome",
    "identifier": "GCF_000013085.1",
    "organism": "Rhodospirillum rubrum ATCC 11170",
    "title": "Rhodospirillum rubrum ATCC 11170",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000013085.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02598538",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "269796",
        "species_taxid": "1085",
        "organism_name": "Rhodospirillum rubrum ATCC 11170",
        "infraspecific_name": "strain=ATCC 11170",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2005/12/12",
        "asm_name": "ASM1308v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000013085.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/085/GCF_000013085.1_ASM1308v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4406557",
        "genome_size_ungapped": "4406557",
        "gc_percent": "65.500000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000013085.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "3973",
        "protein_coding_gene_count": "3863",
        "non_coding_gene_count": "70",
        "pubmed_id": "21886856"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2005-12-12",
    "dateModified": "2005-12-12",
    "datePublished": "2005-12-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rhodospirillum rubrum ATCC 11170"
        ],
        "sample_taxid": [
            "269796"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.206 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4406557",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "4352825",
        "N50 (bp)": "4352825",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "65.4",
        "Number of CDSs": "3969",
        "Average Protein Length": "327.0",
        "Coding Ratio (%)": "88.4",
        "Number of rRNAs": "12",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "12"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Rhodospirillum rubrum",
                "strain": "strain=ATCC 11170",
                "accession": "GCA_000013085.1",
                "taxid": 1085,
                "species_taxid": 1085,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1467,
                "total_fragments": 1467,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Rhodospirillum rubrum",
                "strain": "strain=DSM 467",
                "accession": "GCA_019134555.1",
                "taxid": 1085,
                "species_taxid": 1085,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9988,
                "matched_fragments": 1464,
                "total_fragments": 1467,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pararhodospirillum photometricum",
                "strain": "strain=DSM 122",
                "accession": "GCA_000284415.2",
                "taxid": 1084,
                "species_taxid": 1084,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.089,
                "matched_fragments": 360,
                "total_fragments": 1467,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pararhodospirillum oryzae",
                "strain": "strain=NBRC 107573",
                "accession": "GCA_007992075.1",
                "taxid": 478448,
                "species_taxid": 478448,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0345,
                "matched_fragments": 389,
                "total_fragments": 1467,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseospirillum parvum",
                "strain": "strain=930I",
                "accession": "GCA_900100455.1",
                "taxid": 83401,
                "species_taxid": 83401,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3777,
                "matched_fragments": 332,
                "total_fragments": 1467,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Magnetospirillum aberrantis",
                "strain": "strain=SpK",
                "accession": "GCA_011022235.1",
                "taxid": 1105283,
                "species_taxid": 1105283,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.093,
                "matched_fragments": 280,
                "total_fragments": 1467,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseospira marina",
                "strain": "strain=DSM 15113",
                "accession": "GCA_014203135.1",
                "taxid": 140057,
                "species_taxid": 140057,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0505,
                "matched_fragments": 264,
                "total_fragments": 1467,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseospira goensis",
                "strain": "strain=JA135",
                "accession": "GCA_014197795.1",
                "taxid": 391922,
                "species_taxid": 391922,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0055,
                "matched_fragments": 303,
                "total_fragments": 1467,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseospira navarrensis",
                "strain": "strain=DSM 15114",
                "accession": "GCA_009601025.1",
                "taxid": 140058,
                "species_taxid": 140058,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8595,
                "matched_fragments": 298,
                "total_fragments": 1467,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanibaculum pacificum",
                "strain": "strain=MCCC 1A02656",
                "accession": "GCA_001618175.1",
                "taxid": 580166,
                "species_taxid": 580166,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.76,
                "matched_fragments": 239,
                "total_fragments": 1467,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas flavalba",
                "strain": "strain=ZLT-5",
                "accession": "GCA_004796535.1",
                "taxid": 2559804,
                "species_taxid": 2559804,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1839,
                "matched_fragments": 135,
                "total_fragments": 1467,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoligotrophos defluvii",
                "strain": "strain=lm1",
                "accession": "GCA_005281615.1",
                "taxid": 2561934,
                "species_taxid": 2561934,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1368,
                "matched_fragments": 126,
                "total_fragments": 1467,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas alpina",
                "strain": "strain=DSM 22537",
                "accession": "GCA_025370095.1",
                "taxid": 653931,
                "species_taxid": 653931,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9786,
                "matched_fragments": 98,
                "total_fragments": 1467,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodovarius lipocyclicus",
                "strain": "strain=CCUG 44693",
                "accession": "GCA_009900765.1",
                "taxid": 268410,
                "species_taxid": 268410,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8915,
                "matched_fragments": 186,
                "total_fragments": 1467,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodovarius crocodyli",
                "strain": "strain=CCP-6",
                "accession": "GCA_004005855.1",
                "taxid": 1979269,
                "species_taxid": 1979269,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8175,
                "matched_fragments": 189,
                "total_fragments": 1467,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000013085.1",
                "gtdb_species": "s__Rhodospirillum rubrum",
                "ani": 100.0,
                "matched_fragments": 1466,
                "total_fragments": 1467,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Rhodospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.74",
                "min_intra_species_ani": "96.31",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 7,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000284415.1",
                "gtdb_species": "s__Pararhodospirillum photometricum",
                "ani": 78.0606,
                "matched_fragments": 357,
                "total_fragments": 1467,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Pararhodospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007992075.1",
                "gtdb_species": "s__Pararhodospirillum oryzae",
                "ani": 78.0079,
                "matched_fragments": 392,
                "total_fragments": 1467,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Pararhodospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_006980715.1",
                "gtdb_species": "s__Oleiliquidispirillum nitrogeniifigens",
                "ani": 77.3668,
                "matched_fragments": 312,
                "total_fragments": 1467,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Oleiliquidispirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015232485.1",
                "gtdb_species": "s__JADFZP01 sp015232485",
                "ani": 77.3391,
                "matched_fragments": 272,
                "total_fragments": 1467,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__JADFZP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.70",
                "min_intra_species_ani": "95.97",
                "mean_intra_species_af": "0.70",
                "min_intra_species_af": "0.69",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001650635.1",
                "gtdb_species": "s__Magnetospirillum moscoviense",
                "ani": 77.3311,
                "matched_fragments": 315,
                "total_fragments": 1467,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Magnetospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.81",
                "min_intra_species_ani": "95.25",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900230255.1",
                "gtdb_species": "s__Caenispirillum bisanense",
                "ani": 77.1434,
                "matched_fragments": 369,
                "total_fragments": 1467,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Caenispirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900108475.1",
                "gtdb_species": "s__Phaeospirillum fulvum_A",
                "ani": 77.122,
                "matched_fragments": 285,
                "total_fragments": 1467,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Phaeospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_902729425.1",
                "gtdb_species": "s__Phaeospirillum sp902729425",
                "ani": 77.1217,
                "matched_fragments": 320,
                "total_fragments": 1467,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Phaeospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014197915.1",
                "gtdb_species": "s__Rhodospira visakhapatnamensis",
                "ani": 77.1037,
                "matched_fragments": 331,
                "total_fragments": 1467,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Rhodospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_902729435.1",
                "gtdb_species": "s__Magnetospirillum sp902729435",
                "ani": 77.0967,
                "matched_fragments": 335,
                "total_fragments": 1467,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Magnetospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000442515.1",
                "gtdb_species": "s__Phaeospirillum fulvum_B",
                "ani": 77.0625,
                "matched_fragments": 241,
                "total_fragments": 1467,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Phaeospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014197855.1",
                "gtdb_species": "s__Rhodospira marina",
                "ani": 77.0064,
                "matched_fragments": 263,
                "total_fragments": 1467,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Rhodospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_015232025.1",
                "gtdb_species": "s__JADFZP01 sp015232025",
                "ani": 76.9737,
                "matched_fragments": 225,
                "total_fragments": 1467,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__JADFZP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009601025.1",
                "gtdb_species": "s__Rhodospira navarrensis",
                "ani": 76.8692,
                "matched_fragments": 297,
                "total_fragments": 1467,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Rhodospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903858635.1",
                "gtdb_species": "s__Telmatospirillum sp903858635",
                "ani": 76.6841,
                "matched_fragments": 279,
                "total_fragments": 1467,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Telmatospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.88",
                "min_intra_species_ani": "99.86",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_014205675.1",
                "gtdb_species": "s__Novispirillum itersonii_A",
                "ani": 76.5432,
                "matched_fragments": 250,
                "total_fragments": 1467,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Novispirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002195995.1",
                "gtdb_species": "s__Inquilinus limosus_C",
                "ani": 76.319,
                "matched_fragments": 310,
                "total_fragments": 1467,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__DSM-16000;f__Inquilinaceae;g__Inquilinus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.176,
        "cell_length": 0.845,
        "doubling_h": 0.579,
        "growth_tmp": 27.667,
        "optimum_tmp": 27.5,
        "optimum_ph": null,
        "genome_size": 4386408.5,
        "gc_content": 63.975,
        "coding_genes": 3842.75,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 55.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 1.0
    },
    "_genome_taxon": [
        "Rhodospirillum",
        "rubrum",
        "ATCC",
        "11170"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}