{ "type": "genome", "identifier": "GCF_000013765.1", "organism": "Shewanella denitrificans OS217", "title": "Shewanella denitrificans OS217", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000013765.1", "bioproject": "PRJNA224116", "biosample": "SAMN02598300", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "318161", "species_taxid": "192073", "organism_name": "Shewanella denitrificans OS217", "infraspecific_name": "strain=OS217", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2006/04/10", "asm_name": "ASM1376v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000013765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/765/GCF_000013765.1_ASM1376v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4545906", "genome_size_ungapped": "4545906", "gc_percent": "45.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000013765.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "3969", "protein_coding_gene_count": "3793", "non_coding_gene_count": "121", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2006-04-10", "dateModified": "2006-04-10", "datePublished": "2006-04-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Shewanella denitrificans OS217" ], "sample_taxid": [ "318161" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.289 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4545906", "Number of Sequences": "1", "Longest Sequences (bp)": "4545906", "N50 (bp)": "4545906", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.1", "Number of CDSs": "3876", "Average Protein Length": "330.4", "Coding Ratio (%)": "84.5", "Number of rRNAs": "25", "Number of tRNAs": "93", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Shewanella denitrificans", "strain": "strain=OS217", "accession": "GCA_000013765.1", "taxid": 192073, "species_taxid": 192073, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1513, "total_fragments": 1515, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Shewanella basaltis", "strain": "strain=KCTC 22121", "accession": "GCA_023283885.1", "taxid": 472183, "species_taxid": 472183, "relation_to_type": "type", "validated": true, "ani": 79.2538, "matched_fragments": 313, "total_fragments": 1515, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella polaris", "strain": "strain=SM1901", "accession": "GCA_006385555.1", "taxid": 2588449, "species_taxid": 2588449, "relation_to_type": "type", "validated": true, "ani": 79.0633, "matched_fragments": 315, "total_fragments": 1515, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella glacialimarina", "strain": "strain=TZS-4", "accession": "GCA_020511155.1", "taxid": 2590884, "species_taxid": 2590884, "relation_to_type": "type", "validated": true, "ani": 79.0194, "matched_fragments": 317, "total_fragments": 1515, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain=JCM 17801", "accession": "GCA_023283685.1", "taxid": 1028752, "species_taxid": 1028752, "relation_to_type": "type", "validated": true, "ani": 78.8961, "matched_fragments": 291, "total_fragments": 1515, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella inventionis", "strain": "strain=CGMCC 1.15339", "accession": "GCA_014641855.1", "taxid": 1738770, "species_taxid": 1738770, "relation_to_type": "type", "validated": true, "ani": 78.895, "matched_fragments": 325, "total_fragments": 1515, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella saliphila", "strain": "strain=KCTC 62131", "accession": "GCA_023283695.1", "taxid": 2282698, "species_taxid": 2282698, "relation_to_type": "type", "validated": true, "ani": 78.8717, "matched_fragments": 331, "total_fragments": 1515, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella inventionis", "strain": "strain=KCTC 42807", "accession": "GCA_023283595.1", "taxid": 1738770, "species_taxid": 1738770, "relation_to_type": "type", "validated": true, "ani": 78.8345, "matched_fragments": 320, "total_fragments": 1515, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella algicola", "strain": "strain=JCM 31091", "accession": "GCA_014648035.1", "taxid": 640633, "species_taxid": 640633, "relation_to_type": "type", "validated": true, "ani": 78.7945, "matched_fragments": 320, "total_fragments": 1515, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella litoralis", "strain": "strain=JCM 32306", "accession": "GCA_014648335.1", "taxid": 2282700, "species_taxid": 2282700, "relation_to_type": "type", "validated": true, "ani": 78.789, "matched_fragments": 332, "total_fragments": 1515, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella glacialipiscicola", "strain": "strain=T147", "accession": "GCA_019655235.1", "taxid": 614069, "species_taxid": 614069, "relation_to_type": "type", "validated": true, "ani": 78.7425, "matched_fragments": 237, "total_fragments": 1515, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella seohaensis", "strain": "strain=KCTC 23556", "accession": "GCA_025449215.1", "taxid": 755175, "species_taxid": 755175, "relation_to_type": "type", "validated": true, "ani": 78.6926, "matched_fragments": 278, "total_fragments": 1515, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella profunda", "strain": "strain=DSM 15900", "accession": "GCA_023283765.1", "taxid": 254793, "species_taxid": 254793, "relation_to_type": "type", "validated": true, "ani": 78.625, "matched_fragments": 262, "total_fragments": 1515, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella glacialipiscicola", "strain": "strain=LMG 23744", "accession": "GCA_023283485.1", "taxid": 614069, "species_taxid": 614069, "relation_to_type": "type", "validated": 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