{ "type": "genome", "identifier": "GCF_000014285.2", "organism": "Granulibacter bethesdensis CGDNIH1", "title": "Granulibacter bethesdensis CGDNIH1", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Rocky Mountain Laboratories, National Institutes of Allergy and Infectious Disease, The National Institutes of Health", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000014285.2", "bioproject": "PRJNA224116", "biosample": "SAMN02603769", "wgs_master": "na", "refseq_category": "na", "taxid": "391165", "species_taxid": "364410", "organism_name": "Granulibacter bethesdensis CGDNIH1", "infraspecific_name": "strain=CGDNIH1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/08/28", "asm_name": "ASM1428v2", "asm_submitter": "Rocky Mountain Laboratories, National Institutes of Allergy and Infectious Disease, The National Institutes of Health", "gbrs_paired_asm": "GCA_000014285.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/014/285/GCF_000014285.2_ASM1428v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2708434", "genome_size_ungapped": "2708434", "gc_percent": "59.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000014285.2-RS_2024_12_15", "annotation_date": "2024-12-15", "total_gene_count": "2475", "protein_coding_gene_count": "2396", "non_coding_gene_count": "65", "pubmed_id": "17827295" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-08-28", "dateModified": "2017-08-28", "datePublished": "2017-08-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Granulibacter bethesdensis CGDNIH1" ], "sample_taxid": [ "391165" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.759 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2708434", "Number of Sequences": "1", "Longest Sequences (bp)": "2708434", "N50 (bp)": "2708434", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.1", "Number of CDSs": "2445", "Average Protein Length": "332.4", "Coding Ratio (%)": "90.0", "Number of rRNAs": "9", "Number of tRNAs": "52", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Granulibacter bethesdensis", "strain": "strain=CGDNIH1", 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"below_threshold" }, { "organism_name": "Roseomonas lacus", "strain": "strain=CGMCC 1.3617", "accession": "GCA_014644535.1", "taxid": 287609, "species_taxid": 287609, "relation_to_type": "type", "validated": true, "ani": 76.8759, "matched_fragments": 91, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Endobacter medicaginis", "strain": "strain=CECT 8088", "accession": "GCA_014192375.1", "taxid": 1181271, "species_taxid": 1181271, "relation_to_type": "type", "validated": true, "ani": 76.8266, "matched_fragments": 114, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tanticharoenia sakaeratensis", "strain": "strain=NBRC 103193", "accession": "GCA_000963885.1", "taxid": 444053, "species_taxid": 444053, "relation_to_type": "type", "validated": true, "ani": 76.739, "matched_fragments": 78, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus microcysteis", "strain": "strain=NIBR12", "accession": "GCA_014764365.1", "taxid": 2771361, "species_taxid": 2771361, "relation_to_type": "type", "validated": true, "ani": 76.6913, "matched_fragments": 96, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovarius lipocyclicus", "strain": "strain=CCUG 44693", "accession": "GCA_009900765.1", "taxid": 268410, "species_taxid": 268410, "relation_to_type": "type", "validated": true, "ani": 76.6159, "matched_fragments": 111, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas deserti", "strain": "strain=M3", "accession": "GCA_001982615.1", "taxid": 1817963, "species_taxid": 1817963, "relation_to_type": "type", "validated": true, "ani": 76.5858, "matched_fragments": 97, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsiroseomonas tokyonensis", "strain": "strain=K-20", "accession": 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