{ "type": "genome", "identifier": "GCF_000014805.1", "organism": "Aeromonas hydrophila subsp. hydrophila ATCC 7966", "title": "Aeromonas hydrophila subsp. hydrophila ATCC 7966", "description": "na", "data type": "Genome sequencing and assembly", "organization": "TIGR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000014805.1", "bioproject": "PRJNA224116", "biosample": "SAMN02604052", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "380703", "species_taxid": "644", "organism_name": "Aeromonas hydrophila subsp. hydrophila ATCC 7966", "infraspecific_name": "strain=ATCC 7966", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2006/11/06", "asm_name": "ASM1480v1", "asm_submitter": "TIGR", "gbrs_paired_asm": "GCA_000014805.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/014/805/GCF_000014805.1_ASM1480v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4744448", "genome_size_ungapped": "4744448", "gc_percent": "61.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000014805.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "4356", "protein_coding_gene_count": "4166", "non_coding_gene_count": "162", "pubmed_id": "16980456" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2006-11-06", "dateModified": "2006-11-06", "datePublished": "2006-11-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Aeromonas hydrophila subsp. hydrophila ATCC 7966" ], "sample_taxid": [ "380703" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.318 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.48, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4744448", "Number of Sequences": "1", "Longest Sequences (bp)": "4744448", "N50 (bp)": "4744448", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.5", "Number of CDSs": "4210", "Average Protein Length": "327.1", "Coding Ratio (%)": "87.1", "Number of rRNAs": "31", "Number of tRNAs": "131", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aeromonas hydrophila subsp. hydrophila", "strain": "strain=ATCC 7966", "accession": "GCA_000014805.1", "taxid": 196023, "species_taxid": 644, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1580, "total_fragments": 1581, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aeromonas hydrophila", "strain": "strain=NCTC8049", "accession": "GCA_900445175.1", "taxid": 644, "species_taxid": 644, "relation_to_type": "type", "validated": true, "ani": 99.9996, "matched_fragments": 1577, "total_fragments": 1581, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aeromonas hydrophila", "strain": "strain=ATCC 7966", "accession": "GCA_018360025.1", "taxid": 644, "species_taxid": 644, "relation_to_type": "type", "validated": true, "ani": 99.9829, "matched_fragments": 1550, "total_fragments": 1581, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aeromonas hydrophila", "strain": "strain=ATCC 7966", "accession": "GCA_001999685.1", "taxid": 644, "species_taxid": 644, "relation_to_type": "type", "validated": true, "ani": 99.9642, "matched_fragments": 1509, "total_fragments": 1581, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aeromonas hydrophila subsp. ranae", "strain": "strain=CIP 107985", "accession": "GCA_000820325.1", "taxid": 208958, "species_taxid": 644, "relation_to_type": "type", "validated": true, "ani": 96.8251, "matched_fragments": 1393, "total_fragments": 1581, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aeromonas caviae", "strain": "strain=CECT 838", "accession": "GCA_018360005.1", "taxid": 648, "species_taxid": 648, "relation_to_type": "type", "validated": true, "ani": 88.905, "matched_fragments": 1230, "total_fragments": 1581, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia nevei", "strain": "strain=S15", "accession": "GCA_008364245.1", "taxid": 2703794, "species_taxid": 2703794, "relation_to_type": "type", "validated": true, "ani": 77.2907, "matched_fragments": 287, "total_fragments": 1581, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas hydrolytica", "strain": "strain=DSWY01", "accession": "GCA_021495345.2", "taxid": 2493633, "species_taxid": 2493633, "relation_to_type": "type", "validated": true, "ani": 77.1961, "matched_fragments": 225, "total_fragments": 1581, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas songnenensis", "strain": "strain=NEAU-ST5-5", "accession": "GCA_003696315.1", "taxid": 1176259, "species_taxid": 1176259, "relation_to_type": "type", "validated": true, "ani": 76.7695, "matched_fragments": 141, "total_fragments": 1581, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella jiangmenensis", "strain": "strain=JM162201", "accession": "GCA_018596335.1", "taxid": 2837387, "species_taxid": 2837387, "relation_to_type": "type", "validated": true, "ani": 76.7143, "matched_fragments": 171, "total_fragments": 1581, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=JCM 5962", "accession": "GCA_022496575.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 76.7105, "matched_fragments": 197, "total_fragments": 1581, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.48, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000014805.1", "gtdb_species": "s__Aeromonas hydrophila", "ani": 100.0, "matched_fragments": 1578, "total_fragments": 1581, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.01", "min_intra_species_ani": "96.24", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 120, "status": "conclusive" }, { "accession": "GCF_000820305.1", "gtdb_species": "s__Aeromonas dhakensis", "ani": 93.8885, "matched_fragments": 1369, "total_fragments": 1581, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.35", "min_intra_species_ani": "96.54", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 55, "status": "-" }, { "accession": "GCF_000819745.1", "gtdb_species": "s__Aeromonas bestiarum", "ani": 90.3656, "matched_fragments": 1388, "total_fragments": 1581, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.5033, "mean_intra_species_ani": "97.44", "min_intra_species_ani": "97.31", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000819785.1", "gtdb_species": "s__Aeromonas caviae", "ani": 89.0508, "matched_fragments": 1188, "total_fragments": 1581, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.93", "min_intra_species_ani": "97.49", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", "num_clustered_genomes": 112, "status": "-" }, { "accession": "GCF_000820085.1", "gtdb_species": "s__Aeromonas sanarellii", "ani": 89.0382, "matched_fragments": 1179, "total_fragments": 1581, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.21", "min_intra_species_ani": "98.21", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000820165.1", "gtdb_species": "s__Aeromonas taiwanensis", "ani": 88.8624, "matched_fragments": 1150, "total_fragments": 1581, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.19", "min_intra_species_ani": "97.81", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_000764665.1", "gtdb_species": "s__Aeromonas lacus", "ani": 87.8394, "matched_fragments": 1165, "total_fragments": 1581, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.8323, "mean_intra_species_ani": "96.97", "min_intra_species_ani": "96.97", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_019048265.1", "gtdb_species": "s__Aeromonas veronii_A", "ani": 87.8048, "matched_fragments": 1224, "total_fragments": 1581, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.07", "min_intra_species_ani": "95.82", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000819955.1", "gtdb_species": "s__Aeromonas jandaei", "ani": 87.7649, "matched_fragments": 1219, "total_fragments": 1581, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.8323, "mean_intra_species_ani": "96.79", "min_intra_species_ani": "96.38", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 26, "status": "-" }, { "accession": "GCF_000819845.1", "gtdb_species": "s__Aeromonas enteropelogenes", "ani": 87.6987, "matched_fragments": 1170, "total_fragments": 1581, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.20", "min_intra_species_ani": "96.87", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_000764645.1", "gtdb_species": "s__Aeromonas finlandensis", "ani": 87.6787, "matched_fragments": 1086, "total_fragments": 1581, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014204135.1", "gtdb_species": "s__Aeromonas fluvialis_A", "ani": 87.503, "matched_fragments": 1071, "total_fragments": 1581, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000819885.1", "gtdb_species": "s__Aeromonas fluvialis", "ani": 87.4492, "matched_fragments": 1014, "total_fragments": 1581, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000819725.1", "gtdb_species": "s__Aeromonas australiensis", "ani": 87.1247, "matched_fragments": 1079, "total_fragments": 1581, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.127, "cell_length": 0.301, "doubling_h": -0.45, "growth_tmp": 32.843, "optimum_tmp": 26.5, "optimum_ph": 7.25, "genome_size": 4901137.537, "gc_content": 61.079, "coding_genes": 4344.25, "rRNA16S_genes": 10.0, "tRNA_genes": 117.562, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 0.75, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Aeromonas", "hydrophila", "subsp.", "hydrophila", "ATCC", "7966" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }