{ "type": "genome", "identifier": "GCF_000014885.1", "organism": "Shewanella piezotolerans WP3", "title": "Shewanella piezotolerans WP3", "description": "na", "data type": "Genome sequencing and assembly", "organization": "James D. Watson Institute of Genome Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000014885.1", "bioproject": "PRJNA224116", "biosample": "SAMN02603456", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "225849", "species_taxid": "404011", "organism_name": "Shewanella piezotolerans WP3", "infraspecific_name": "strain=WP3", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2008/11/13", "asm_name": "ASM1488v1", "asm_submitter": "James D. Watson Institute of Genome Sciences", "gbrs_paired_asm": "GCA_000014885.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/014/885/GCF_000014885.1_ASM1488v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5396476", "genome_size_ungapped": "5396476", "gc_percent": "43.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000014885.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4627", "protein_coding_gene_count": "4442", "non_coding_gene_count": "115", "pubmed_id": "18398463" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2008-11-13", "dateModified": "2008-11-13", "datePublished": "2008-11-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Shewanella piezotolerans WP3" ], "sample_taxid": [ "225849" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.532 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5396476", "Number of Sequences": "1", "Longest Sequences (bp)": "5396476", "N50 (bp)": "5396476", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.3", "Number of CDSs": "4547", "Average Protein Length": "330.8", "Coding Ratio (%)": "83.6", "Number of rRNAs": "25", "Number of tRNAs": "85", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Shewanella piezotolerans", "strain": "strain=WP3", "accession": "GCA_000014885.1", "taxid": 404011, "species_taxid": 404011, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1798, "total_fragments": 1798, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Shewanella kaireitica", "strain": "strain=DSM 17170", "accession": "GCA_023284045.1", "taxid": 212021, "species_taxid": 212021, "relation_to_type": "type", "validated": true, "ani": 91.7191, "matched_fragments": 1491, "total_fragments": 1798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella abyssi", "strain": "strain=DSM 17171", "accession": "GCA_023284025.1", "taxid": 311789, "species_taxid": 311789, "relation_to_type": "type", "validated": true, "ani": 81.3195, "matched_fragments": 967, "total_fragments": 1798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella gelidimarina", "strain": "strain=ATCC 700752", "accession": "GCA_023283945.1", "taxid": 56813, "species_taxid": 56813, "relation_to_type": "type", "validated": true, "ani": 81.2891, "matched_fragments": 960, "total_fragments": 1798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella pealeana", "strain": "strain=ATCC 700345", "accession": "GCA_000018285.1", "taxid": 70864, "species_taxid": 70864, "relation_to_type": "type", "validated": true, "ani": 80.3499, "matched_fragments": 643, "total_fragments": 1798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella sairae", "strain": "strain=LMG 21408", "accession": "GCA_023283535.1", "taxid": 190310, "species_taxid": 190310, "relation_to_type": "type", "validated": true, "ani": 80.0952, "matched_fragments": 613, "total_fragments": 1798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella schlegeliana", "strain": "strain=JCM 11561", "accession": "GCA_016765635.1", "taxid": 190308, "species_taxid": 190308, "relation_to_type": "type", "validated": true, "ani": 80.0572, "matched_fragments": 648, "total_fragments": 1798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella marinintestina", "strain": "strain=LMG 21403", "accession": "GCA_023283845.1", "taxid": 190305, "species_taxid": 190305, "relation_to_type": "type", "validated": true, "ani": 80.0391, "matched_fragments": 649, "total_fragments": 1798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella sediminis", "strain": "strain=HAW-EB3", "accession": "GCA_000018025.1", "taxid": 271097, "species_taxid": 271097, "relation_to_type": "type", "validated": true, "ani": 79.8526, "matched_fragments": 381, "total_fragments": 1798, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000014885.1", "gtdb_species": "s__Shewanella piezotolerans", "ani": 100.0, "matched_fragments": 1798, 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