{ "type": "genome", "identifier": "GCF_000015445.1", "organism": "Bartonella bacilliformis KC583", "title": "Bartonella bacilliformis KC583", "description": "na", "data type": "Genome sequencing and assembly", "organization": "TIGR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000015445.1", "bioproject": "PRJNA224116", "biosample": "SAMN02604047", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "360095", "species_taxid": "774", "organism_name": "Bartonella bacilliformis KC583", "infraspecific_name": "strain=KC583; ATCC 35685", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2007/01/04", "asm_name": "ASM1544v1", "asm_submitter": "TIGR", "gbrs_paired_asm": "GCA_000015445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/015/445/GCF_000015445.1_ASM1544v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1445021", "genome_size_ungapped": "1445021", "gc_percent": "38.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000015445.1-RS_2024_04_29", "annotation_date": "2024-04-29", "total_gene_count": "1267", "protein_coding_gene_count": "1163", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2007-01-04", "dateModified": "2007-01-04", "datePublished": "2007-01-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Bartonella bacilliformis KC583" ], "sample_taxid": [ "360095" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.401 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 14.06, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1445021", "Number of Sequences": "1", "Longest Sequences (bp)": "1445021", "N50 (bp)": "1445021", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.2", "Number of CDSs": "1246", "Average Protein Length": "314.1", "Coding Ratio (%)": "81.3", "Number of rRNAs": "6", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bartonella bacilliformis", "strain": "strain=KC583; ATCC 35685", "accession": "GCA_000015445.1", "taxid": 774, "species_taxid": 774, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 477, "total_fragments": 481, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bartonella schoenbuchensis", "strain": "strain=R1", "accession": "GCA_002022685.1", "taxid": 165694, "species_taxid": 165694, "relation_to_type": "type", "validated": true, "ani": 80.5732, "matched_fragments": 350, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella capreoli", "strain": "strain=DSM 21569", "accession": "GCA_902813205.1", "taxid": 155192, "species_taxid": 155192, "relation_to_type": "type", "validated": true, "ani": 80.5199, "matched_fragments": 342, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella schoenbuchensis", "strain": "strain=CCUG 50783", "accession": "GCA_902810545.1", "taxid": 165694, "species_taxid": 165694, "relation_to_type": "suspected-type", "validated": true, "ani": 80.3946, "matched_fragments": 355, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella bovis", "strain": "strain=CIP 106692", "accession": "GCA_902728095.1", "taxid": 155194, "species_taxid": 155194, "relation_to_type": "type", "validated": true, "ani": 80.3156, "matched_fragments": 341, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella clarridgeiae", "strain": "strain=ATCC 51734", "accession": "GCA_000518185.1", "taxid": 56426, "species_taxid": 56426, "relation_to_type": "type", "validated": true, "ani": 80.0637, "matched_fragments": 304, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella henselae", "strain": "strain=Houston-1", "accession": "GCA_000046705.1", "taxid": 38323, "species_taxid": 38323, "relation_to_type": "type", "validated": true, "ani": 79.6537, "matched_fragments": 294, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella henselae", "strain": "strain=Houston-I", "accession": "GCA_002735245.1", "taxid": 38323, "species_taxid": 38323, "relation_to_type": "type", "validated": true, "ani": 79.643, "matched_fragments": 289, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella vinsonii subsp. arupensis", "strain": "strain=OK-94-513", "accession": "GCA_000278235.1", "taxid": 110578, "species_taxid": 33047, "relation_to_type": "type", "validated": true, "ani": 79.6198, "matched_fragments": 299, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella birtlesii", "strain": "strain=IBS 325", "accession": "GCA_000273375.1", "taxid": 111504, "species_taxid": 111504, "relation_to_type": "type", "validated": true, "ani": 79.6115, "matched_fragments": 293, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella doshiae", "strain": "strain=NCTC12862", "accession": "GCA_900445535.1", "taxid": 33044, "species_taxid": 33044, "relation_to_type": "type", "validated": true, "ani": 79.5754, "matched_fragments": 280, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella doshiae", "strain": "strain=NCTC 12862", "accession": "GCA_000278155.1", "taxid": 33044, "species_taxid": 33044, "relation_to_type": "type", "validated": true, "ani": 79.569, "matched_fragments": 283, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella doshiae", "strain": "strain=ATCC 700133", "accession": "GCA_000526895.1", "taxid": 33044, "species_taxid": 33044, "relation_to_type": "type", "validated": true, "ani": 79.5226, "matched_fragments": 280, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella henselae", "strain": "strain=FDAARGOS_175", "accession": "GCA_001525625.2", "taxid": 38323, "species_taxid": 38323, "relation_to_type": "type", "validated": true, "ani": 79.5117, "matched_fragments": 289, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella rochalimae", "strain": "strain=ATCC BAA-1498", "accession": "GCA_000706645.1", "taxid": 395923, "species_taxid": 395923, "relation_to_type": "type", "validated": true, "ani": 79.5085, "matched_fragments": 316, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella vinsonii subsp. arupensis", "strain": "strain=ATCC 700727", "accession": "GCA_902825115.1", "taxid": 110578, "species_taxid": 33047, "relation_to_type": "type", "validated": true, "ani": 79.4872, "matched_fragments": 301, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella doshiae", "strain": "strain=DSM 102055", "accession": "GCA_014201435.1", "taxid": 33044, "species_taxid": 33044, "relation_to_type": "type", "validated": true, "ani": 79.4724, "matched_fragments": 274, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella phoceensis", "strain": "strain=CIP107707", "accession": "GCA_902825145.1", "taxid": 270249, "species_taxid": 270249, "relation_to_type": "type", "validated": true, "ani": 79.3308, "matched_fragments": 279, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella florencae", "strain": "strain=R4", "accession": "GCA_000312525.1", "taxid": 928210, "species_taxid": 928210, "relation_to_type": "type", "validated": true, "ani": 79.2153, "matched_fragments": 281, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella harrusi", "strain": "strain=117A", "accession": "GCA_024297065.1", "taxid": 2961895, "species_taxid": 2961895, "relation_to_type": "type", "validated": true, "ani": 79.0861, "matched_fragments": 286, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella krasnovii", "strain": "strain=OE 1-1", "accession": "GCA_003606345.3", "taxid": 2267275, "species_taxid": 2267275, "relation_to_type": "type", "validated": true, "ani": 79.0471, "matched_fragments": 258, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella kosoyi", "strain": "strain=Tel Aviv", "accession": "GCA_003606325.3", "taxid": 2133959, "species_taxid": 2133959, "relation_to_type": "type", "validated": true, "ani": 79.0225, "matched_fragments": 262, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella saheliensis", "strain": "strain=077", "accession": "GCA_902162175.1", "taxid": 1457016, "species_taxid": 1457016, "relation_to_type": "type", "validated": true, "ani": 78.967, "matched_fragments": 224, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella australis", "strain": "strain=AUST/NH1", "accession": "GCA_000341355.1", "taxid": 388640, "species_taxid": 388640, "relation_to_type": "type", "validated": true, "ani": 78.4411, "matched_fragments": 246, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 14.06, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_000015445.1", "gtdb_species": "s__Bartonella bacilliformis", "ani": 100.0, "matched_fragments": 477, "total_fragments": 481, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.64", "min_intra_species_ani": "99.04", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.96", "num_clustered_genomes": 16, "status": "conclusive" }, { "accession": "GCF_000709795.1", "gtdb_species": "s__Bartonella bacilliformis_A", "ani": 94.6193, "matched_fragments": 445, "total_fragments": 481, "gtdb_taxonomy": 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38.2, "coding_genes": 1211.0, "rRNA16S_genes": 2.0, "tRNA_genes": 44.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Bartonella", "bacilliformis", "KC583" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }