{
    "type": "genome",
    "identifier": "GCF_000015565.1",
    "organism": "Verminephrobacter eiseniae EF01-2",
    "title": "Verminephrobacter eiseniae EF01-2",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000015565.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02598379",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "391735",
        "species_taxid": "364317",
        "organism_name": "Verminephrobacter eiseniae EF01-2",
        "infraspecific_name": "strain=EF01-2",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2007/01/09",
        "asm_name": "ASM1556v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000015565.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/015/565/GCF_000015565.1_ASM1556v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5597943",
        "genome_size_ungapped": "5597943",
        "gc_percent": "65.000000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000015565.1-RS_2024_12_13",
        "annotation_date": "2024-12-13",
        "total_gene_count": "5339",
        "protein_coding_gene_count": "5102",
        "non_coding_gene_count": "59",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2007-01-09",
    "dateModified": "2007-01-09",
    "datePublished": "2007-01-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Verminephrobacter eiseniae EF01-2"
        ],
        "sample_taxid": [
            "391735"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.514 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5597943",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "5566749",
        "N50 (bp)": "5566749",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "65.2",
        "Number of CDSs": "4961",
        "Average Protein Length": "332.5",
        "Coding Ratio (%)": "88.4",
        "Number of rRNAs": "9",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Verminephrobacter eiseniae",
                "strain": "strain=EF01-2",
                "accession": "GCA_000015565.1",
                "taxid": 364317,
                "species_taxid": 364317,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1864,
                "total_fragments": 1865,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Verminephrobacter aporrectodeae subsp. tuberculatae",
                "strain": "strain=At4",
                "accession": "GCA_000193225.2",
                "taxid": 1110392,
                "species_taxid": 1110389,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.3223,
                "matched_fragments": 714,
                "total_fragments": 1865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax kalamii",
                "strain": "strain=KNDSW-TSA6",
                "accession": "GCA_002245625.1",
                "taxid": 2004485,
                "species_taxid": 2004485,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4962,
                "matched_fragments": 748,
                "total_fragments": 1865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax delafieldii",
                "strain": "strain=DSM 64",
                "accession": "GCA_007993815.1",
                "taxid": 47920,
                "species_taxid": 47920,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2062,
                "matched_fragments": 721,
                "total_fragments": 1865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax radicis",
                "strain": "strain=N35",
                "accession": "GCA_000204195.2",
                "taxid": 758826,
                "species_taxid": 758826,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1217,
                "matched_fragments": 758,
                "total_fragments": 1865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax soli",
                "strain": "strain=DSM 25157",
                "accession": "GCA_900107605.1",
                "taxid": 592050,
                "species_taxid": 592050,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0615,
                "matched_fragments": 629,
                "total_fragments": 1865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax facilis",
                "strain": "strain=DSM 649",
                "accession": "GCA_023913775.1",
                "taxid": 12917,
                "species_taxid": 12917,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9898,
                "matched_fragments": 737,
                "total_fragments": 1865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax valerianellae",
                "strain": "strain=DSM 16619",
                "accession": "GCA_900102625.1",
                "taxid": 187868,
                "species_taxid": 187868,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9293,
                "matched_fragments": 589,
                "total_fragments": 1865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax caeni",
                "strain": "strain=R-24608",
                "accession": "GCA_900116825.1",
                "taxid": 343013,
                "species_taxid": 343013,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4509,
                "matched_fragments": 541,
                "total_fragments": 1865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenophaga crocea",
                "strain": "strain=BA0156",
                "accession": "GCA_011388215.1",
                "taxid": 2716225,
                "species_taxid": 2716225,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1225,
                "matched_fragments": 557,
                "total_fragments": 1865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xylophilus ampelinus",
                "strain": "strain=CFBP 1192",
                "accession": "GCA_024832295.1",
                "taxid": 54067,
                "species_taxid": 54067,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0226,
                "matched_fragments": 492,
                "total_fragments": 1865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter pinisoli",
                "strain": "strain=MAH-25",
                "accession": "GCA_009758015.1",
                "taxid": 2682844,
                "species_taxid": 2682844,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6937,
                "matched_fragments": 544,
                "total_fragments": 1865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter agri",
                "strain": "strain=G-1-2-2",
                "accession": "GCA_012927085.1",
                "taxid": 2728837,
                "species_taxid": 2728837,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4104,
                "matched_fragments": 594,
                "total_fragments": 1865,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000015565.1",
                "gtdb_species": "s__Acidovorax eiseniae",
                "ani": 100.0,
                "matched_fragments": 1864,
                "total_fragments": 1865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000193225.1",
                "gtdb_species": "s__Acidovorax aporrectodeae",
                "ani": 82.3307,
                "matched_fragments": 712,
                "total_fragments": 1865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003852545.1",
                "gtdb_species": "s__Acidovorax sp003852545",
                "ani": 81.906,
                "matched_fragments": 749,
                "total_fragments": 1865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019218755.1",
                "gtdb_species": "s__Acidovorax sp019218755",
                "ani": 81.784,
                "matched_fragments": 790,
                "total_fragments": 1865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.86",
                "min_intra_species_ani": "98.86",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001633105.1",
                "gtdb_species": "s__Acidovorax sp001633105",
                "ani": 81.6058,
                "matched_fragments": 769,
                "total_fragments": 1865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001424425.1",
                "gtdb_species": "s__Acidovorax sp001424425",
                "ani": 81.566,
                "matched_fragments": 774,
                "total_fragments": 1865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.93",
                "min_intra_species_ani": "99.87",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001422735.1",
                "gtdb_species": "s__Acidovorax sp001422735",
                "ani": 81.5554,
                "matched_fragments": 747,
                "total_fragments": 1865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002245625.1",
                "gtdb_species": "s__Acidovorax kalamii",
                "ani": 81.4918,
                "matched_fragments": 747,
                "total_fragments": 1865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003058055.1",
                "gtdb_species": "s__Acidovorax sp003058055",
                "ani": 81.4065,
                "matched_fragments": 734,
                "total_fragments": 1865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.89",
                "min_intra_species_ani": "97.89",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_013376875.1",
                "gtdb_species": "s__Acidovorax sp001411535",
                "ani": 81.2675,
                "matched_fragments": 752,
                "total_fragments": 1865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.38",
                "min_intra_species_ani": "95.78",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 16,
                "status": "-"
            },
            {
                "accession": "GCF_003053545.1",
                "gtdb_species": "s__Acidovorax sp003053545",
                "ani": 81.213,
                "matched_fragments": 795,
                "total_fragments": 1865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.66",
                "min_intra_species_ani": "97.32",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_003208485.1",
                "gtdb_species": "s__Acidovorax sp003208485",
                "ani": 81.1751,
                "matched_fragments": 757,
                "total_fragments": 1865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014207955.1",
                "gtdb_species": "s__Acidovorax soli_A",
                "ani": 81.175,
                "matched_fragments": 804,
                "total_fragments": 1865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013408765.1",
                "gtdb_species": "s__Acidovorax sp013408765",
                "ani": 81.1498,
                "matched_fragments": 773,
                "total_fragments": 1865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000238595.1",
                "gtdb_species": "s__Acidovorax facilis",
                "ani": 81.1452,
                "matched_fragments": 677,
                "total_fragments": 1865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.91",
                "min_intra_species_ani": "97.91",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_019219095.1",
                "gtdb_species": "s__Acidovorax sp019219095",
                "ani": 81.0934,
                "matched_fragments": 763,
                "total_fragments": 1865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900107605.1",
                "gtdb_species": "s__Acidovorax soli",
                "ani": 81.0574,
                "matched_fragments": 630,
                "total_fragments": 1865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.72",
                "min_intra_species_ani": "95.72",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_011620245.1",
                "gtdb_species": "s__Acidovorax sp011620245",
                "ani": 80.8429,
                "matched_fragments": 346,
                "total_fragments": 1865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004210805.1",
                "gtdb_species": "s__Acidovorax sp004210805",
                "ani": 80.7466,
                "matched_fragments": 607,
                "total_fragments": 1865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000175235.1",
                "gtdb_species": "s__Acidovorax delafieldii_B",
                "ani": 80.5729,
                "matched_fragments": 546,
                "total_fragments": 1865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900102625.1",
                "gtdb_species": "s__Acidovorax_A valerianellae",
                "ani": 79.9379,
                "matched_fragments": 586,
                "total_fragments": 1865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.699,
        "cell_length": 0.176,
        "doubling_h": 0.812,
        "growth_tmp": 26.5,
        "optimum_tmp": 26.5,
        "optimum_ph": 7.85,
        "genome_size": 5597942.4,
        "gc_content": 63.024,
        "coding_genes": 4798.333,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 47.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Verminephrobacter",
        "eiseniae",
        "EF01-2"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}