{ "type": "genome", "identifier": "GCF_000015585.1", "organism": "Halorhodospira halophila SL1", "title": "Halorhodospira halophila SL1", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000015585.1", "bioproject": "PRJNA224116", "biosample": "SAMN00623046", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "349124", "species_taxid": "1053", "organism_name": "Halorhodospira halophila SL1", "infraspecific_name": "strain=SL1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2007/01/10", "asm_name": "ASM1558v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000015585.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/015/585/GCF_000015585.1_ASM1558v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2678452", "genome_size_ungapped": "2678452", "gc_percent": "68.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000015585.1-RS_2024_04_26", "annotation_date": "2024-04-26", "total_gene_count": "2518", "protein_coding_gene_count": "2434", "non_coding_gene_count": "56", "pubmed_id": "23991253" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2007-01-10", "dateModified": "2007-01-10", "datePublished": "2007-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Halorhodospira halophila SL1" ], "sample_taxid": [ "349124" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.733 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2678452", "Number of Sequences": "1", "Longest Sequences (bp)": "2678452", "N50 (bp)": "2678452", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.0", "Number of CDSs": "2483", "Average Protein Length": "331.5", "Coding Ratio (%)": "92.2", "Number of rRNAs": "6", "Number of tRNAs": "48", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halorhodospira halophila", "strain": "strain=SL1", "accession": "GCA_000015585.1", "taxid": 1053, "species_taxid": 1053, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 892, "total_fragments": 892, "ani_threshold": 95, 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"Spiribacter aquaticus", "strain": "strain=SP30", "accession": "GCA_007625215.1", "taxid": 1935996, "species_taxid": 1935996, "relation_to_type": "type", "validated": true, "ani": 77.5327, "matched_fragments": 130, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arhodomonas aquaeolei", "strain": "strain=DSM 8974", "accession": "GCA_000374645.1", "taxid": 2369, "species_taxid": 2369, "relation_to_type": "type", "validated": true, "ani": 77.472, "matched_fragments": 228, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalospira halophila", "strain": "strain=HL 3", "accession": "GCA_900112605.1", "taxid": 381300, "species_taxid": 381300, "relation_to_type": "type", "validated": true, "ani": 77.4223, "matched_fragments": 168, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalobacter thiocyanaticus", "strain": "strain=Hrh1", "accession": 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132, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax marinus", "strain": "strain=R8-12", "accession": "GCA_025532125.1", "taxid": 1177169, "species_taxid": 1177169, "relation_to_type": "type", "validated": true, "ani": 76.1614, "matched_fragments": 115, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter algicola", "strain": "strain=CrO1", "accession": "GCA_016641735.1", "taxid": 2795217, "species_taxid": 2795217, "relation_to_type": "type", "validated": true, "ani": 76.1168, "matched_fragments": 80, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parahaliea mediterranea", "strain": "strain=DSM 21924", "accession": "GCA_003402235.1", "taxid": 651086, "species_taxid": 651086, "relation_to_type": "type", "validated": true, "ani": 75.992, "matched_fragments": 81, "total_fragments": 892, "ani_threshold": 95, "status": 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