{
    "type": "genome",
    "identifier": "GCF_000018105.1",
    "organism": "Acaryochloris marina MBIC11017",
    "title": "Acaryochloris marina MBIC11017",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Washington University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000018105.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02604308",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "329726",
        "species_taxid": "155978",
        "organism_name": "Acaryochloris marina MBIC11017",
        "infraspecific_name": "strain=MBIC11017",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2007/10/16",
        "asm_name": "ASM1810v1",
        "asm_submitter": "Washington University",
        "gbrs_paired_asm": "GCA_000018105.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/018/105/GCF_000018105.1_ASM1810v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "8361599",
        "genome_size_ungapped": "8361599",
        "gc_percent": "47.000000",
        "replicon_count": "10",
        "scaffold_count": "10",
        "contig_count": "10",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000018105.1-RS_2024_10_11",
        "annotation_date": "2024-10-11",
        "total_gene_count": "7655",
        "protein_coding_gene_count": "7324",
        "non_coding_gene_count": "84",
        "pubmed_id": "18252824"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2007-10-16",
    "dateModified": "2007-10-16",
    "datePublished": "2007-10-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Acaryochloris marina MBIC11017"
        ],
        "sample_taxid": [
            "329726"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "2.384 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "8361599",
        "Number of Sequences": "10",
        "Longest Sequences (bp)": "6503724",
        "N50 (bp)": "6503724",
        "Gap Ratio (%)": "0.000012",
        "GCcontent (%)": "47.0",
        "Number of CDSs": "7425",
        "Average Protein Length": "308.0",
        "Coding Ratio (%)": "82.0",
        "Number of rRNAs": "6",
        "Number of tRNAs": "73",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Acaryochloris marina",
                "strain": "strain=MBIC11017",
                "accession": "GCA_000018105.1",
                "taxid": 155978,
                "species_taxid": 155978,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2781,
                "total_fragments": 2782,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Adonisia turfae",
                "strain": "strain=CCMR0081",
                "accession": "GCA_011009555.1",
                "taxid": 2950184,
                "species_taxid": 2950184,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.617,
                "matched_fragments": 68,
                "total_fragments": 2782,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Scytonema hofmannii",
                "strain": "strain=PCC 7110",
                "accession": "GCA_000346485.2",
                "taxid": 34078,
                "species_taxid": 34078,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1427,
                "matched_fragments": 53,
                "total_fragments": 2782,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acaryochloris thomasi",
                "strain": "strain=RCC1774",
                "accession": "GCA_003231495.1",
                "taxid": 2929456,
                "species_taxid": 2929456,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1417,
                "matched_fragments": 114,
                "total_fragments": 2782,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomicronema hongdechloris",
                "strain": "strain=C2206",
                "accession": "GCA_002075285.3",
                "taxid": 1209493,
                "species_taxid": 1209493,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1154,
                "matched_fragments": 54,
                "total_fragments": 2782,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planktothrix tepida",
                "strain": "strain=PCC9214",
                "accession": "GCA_904830955.1",
                "taxid": 1678309,
                "species_taxid": 1678309,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0682,
                "matched_fragments": 51,
                "total_fragments": 2782,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000018105.1",
                "gtdb_species": "s__Acaryochloris marina",
                "ani": 100.0,
                "matched_fragments": 2781,
                "total_fragments": 2782,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Thermosynechococcales;f__Thermosynechococcaceae;g__Acaryochloris",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000238775.1",
                "gtdb_species": "s__Acaryochloris sp000238775",
                "ani": 93.6283,
                "matched_fragments": 1846,
                "total_fragments": 2782,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Thermosynechococcales;f__Thermosynechococcaceae;g__Acaryochloris",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018336915.1",
                "gtdb_species": "s__Acaryochloris marina_A",
                "ani": 85.416,
                "matched_fragments": 1741,
                "total_fragments": 2782,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Thermosynechococcales;f__Thermosynechococcaceae;g__Acaryochloris",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012034865.1",
                "gtdb_species": "s__Acaryochloris sp012034865",
                "ani": 77.0712,
                "matched_fragments": 390,
                "total_fragments": 2782,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Thermosynechococcales;f__Thermosynechococcaceae;g__Acaryochloris",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.65",
                "min_intra_species_ani": "97.52",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_009939295.1",
                "gtdb_species": "s__WVIC01 sp009939295",
                "ani": 75.9061,
                "matched_fragments": 74,
                "total_fragments": 2782,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Thermosynechococcales;f__Thermosynechococcaceae;g__WVIC01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016888135.1",
                "gtdb_species": "s__RECH01 sp016888135",
                "ani": 75.819,
                "matched_fragments": 52,
                "total_fragments": 2782,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Elainellales;f__Elainellaceae;g__RECH01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.61",
                "min_intra_species_ani": "96.61",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": 1.581,
        "growth_tmp": 26.6,
        "optimum_tmp": 32.5,
        "optimum_ph": null,
        "genome_size": 8361599.2,
        "gc_content": 45.735,
        "coding_genes": 7591.333,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 67.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Acaryochloris",
        "marina",
        "MBIC11017"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}