{
    "type": "genome",
    "identifier": "GCF_000018685.1",
    "organism": "Lachnoclostridium phytofermentans ISDg",
    "title": "Lachnoclostridium phytofermentans ISDg",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000018685.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02598360",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "357809",
        "species_taxid": "66219",
        "organism_name": "Lachnoclostridium phytofermentans ISDg",
        "infraspecific_name": "strain=ISDg",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2007/11/19",
        "asm_name": "ASM1868v1",
        "asm_submitter": "US DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000018685.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/018/685/GCF_000018685.1_ASM1868v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4847594",
        "genome_size_ungapped": "4847594",
        "gc_percent": "35.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000018685.1-RS_2024_12_13",
        "annotation_date": "2024-12-13",
        "total_gene_count": "4134",
        "protein_coding_gene_count": "4018",
        "non_coding_gene_count": "89",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2007-11-19",
    "dateModified": "2007-11-19",
    "datePublished": "2007-11-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lachnoclostridium phytofermentans ISDg"
        ],
        "sample_taxid": [
            "357809"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.357 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4847594",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4847594",
        "N50 (bp)": "4847594",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "35.3",
        "Number of CDSs": "4136",
        "Average Protein Length": "323.2",
        "Coding Ratio (%)": "82.7",
        "Number of rRNAs": "24",
        "Number of tRNAs": "60",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Lachnoclostridium phytofermentans",
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                "accession": "GCA_000018685.1",
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                "species_taxid": 66219,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
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                "total_fragments": 1615,
                "ani_threshold": 95,
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            },
            {
                "organism_name": "Anaerocolumna aminovalerica",
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                "taxid": 1527,
                "species_taxid": 1527,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            },
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                "organism_name": "Variimorphobacter saccharofermentans",
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                "status": "below_threshold"
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                "organism_name": "Anaerosporobacter mobilis",
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                "species_taxid": 264463,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Anaerosporobacter faecicola",
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                "species_taxid": 2718714,
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                "ani": 77.36,
                "matched_fragments": 94,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Clostridium] populeti",
                "strain": "strain=743A",
                "accession": "GCA_900112775.1",
                "taxid": 37658,
                "species_taxid": 37658,
                "relation_to_type": "type",
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                "ani": 77.1901,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Velocimicrobium porci",
                "strain": "strain=WCA-693-APC-MOT-I",
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                "species_taxid": 2606634,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Mobilisporobacter senegalensis",
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                "status": "below_threshold"
            }
        ],
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                "accession": "GCF_000018685.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCF_000733755.1",
                "gtdb_species": "s__Lachnoclostridium phytofermentans_A",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "phytofermentans",
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}