{
    "type": "genome",
    "identifier": "GCF_000018865.1",
    "organism": "Chloroflexus aurantiacus J-10-fl",
    "title": "Chloroflexus aurantiacus J-10-fl",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000018865.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02598539",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "324602",
        "species_taxid": "1108",
        "organism_name": "Chloroflexus aurantiacus J-10-fl",
        "infraspecific_name": "strain=J-10-fl",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2007/12/20",
        "asm_name": "ASM1886v1",
        "asm_submitter": "US DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000018865.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/018/865/GCF_000018865.1_ASM1886v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5258541",
        "genome_size_ungapped": "5258541",
        "gc_percent": "56.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000018865.1-RS_2024_04_10",
        "annotation_date": "2024-04-10",
        "total_gene_count": "4119",
        "protein_coding_gene_count": "4028",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2007-12-20",
    "dateModified": "2007-12-20",
    "datePublished": "2007-12-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Chloroflexus aurantiacus J-10-fl"
        ],
        "sample_taxid": [
            "324602"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.472 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 2.08,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5258541",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "5258541",
        "N50 (bp)": "5258541",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "56.7",
        "Number of CDSs": "4281",
        "Average Protein Length": "336.1",
        "Coding Ratio (%)": "82.1",
        "Number of rRNAs": "6",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "6"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Chloroflexus aurantiacus",
                "strain": "strain=J-10-fl",
                "accession": "GCA_000018865.1",
                "taxid": 1108,
                "species_taxid": 1108,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1752,
                "total_fragments": 1752,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Chloroflexus islandicus",
                "strain": "strain=isl-2",
                "accession": "GCA_001650695.1",
                "taxid": 1707952,
                "species_taxid": 1707952,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2486,
                "matched_fragments": 618,
                "total_fragments": 1752,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chloroflexus aggregans",
                "strain": "strain=DSM 9485",
                "accession": "GCA_000021945.1",
                "taxid": 152260,
                "species_taxid": 152260,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.662,
                "matched_fragments": 478,
                "total_fragments": 1752,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseiflexus castenholzii",
                "strain": "strain=DSM 13941",
                "accession": "GCA_000017805.1",
                "taxid": 120962,
                "species_taxid": 120962,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3804,
                "matched_fragments": 84,
                "total_fragments": 1752,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oscillochloris trichoides",
                "strain": "strain=DG-6",
                "accession": "GCA_000152145.1",
                "taxid": 104176,
                "species_taxid": 104176,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6809,
                "matched_fragments": 95,
                "total_fragments": 1752,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 2.08,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000018865.1",
                "gtdb_species": "s__Chloroflexus aurantiacus",
                "ani": 100.0,
                "matched_fragments": 1752,
                "total_fragments": 1752,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Chloroflexaceae;g__Chloroflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.51",
                "min_intra_species_ani": "98.60",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 7,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001650695.1",
                "gtdb_species": "s__Chloroflexus islandicus",
                "ani": 78.2482,
                "matched_fragments": 618,
                "total_fragments": 1752,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Chloroflexaceae;g__Chloroflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000516515.1",
                "gtdb_species": "s__Chloroflexus sp000516515",
                "ani": 78.1354,
                "matched_fragments": 589,
                "total_fragments": 1752,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Chloroflexaceae;g__Chloroflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.29",
                "min_intra_species_ani": "95.23",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000735195.1",
                "gtdb_species": "s__Chloroflexus sp000735195",
                "ani": 78.0807,
                "matched_fragments": 560,
                "total_fragments": 1752,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Chloroflexaceae;g__Chloroflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.40",
                "min_intra_species_ani": "95.13",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000021945.1",
                "gtdb_species": "s__Chloroflexus aggregans",
                "ani": 77.6641,
                "matched_fragments": 473,
                "total_fragments": 1752,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Chloroflexaceae;g__Chloroflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004138175.2",
                "gtdb_species": "s__Oscillochloris sp004138175",
                "ani": 75.7062,
                "matched_fragments": 78,
                "total_fragments": 1752,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Chloroflexaceae;g__Oscillochloris",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903877945.1",
                "gtdb_species": "s__Oscillochloris sp903877945",
                "ani": 75.7034,
                "matched_fragments": 57,
                "total_fragments": 1752,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Chloroflexaceae;g__Oscillochloris",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.99",
                "min_intra_species_ani": "98.27",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCA_903887465.1",
                "gtdb_species": "s__Oscillochloris sp903887465",
                "ani": 75.3207,
                "matched_fragments": 75,
                "total_fragments": 1752,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Chloroflexaceae;g__Oscillochloris",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.82",
                "min_intra_species_ani": "99.74",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 6,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.176,
        "cell_length": null,
        "doubling_h": 0.618,
        "growth_tmp": 51.333,
        "optimum_tmp": 54.833,
        "optimum_ph": null,
        "genome_size": 5258540.8,
        "gc_content": 56.7,
        "coding_genes": 3853.0,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 49.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 1.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Chloroflexus",
        "aurantiacus",
        "J-10-fl"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}