{ "type": "genome", "identifier": "GCF_000020045.1", "organism": "Paraburkholderia phymatum STM815", "title": "Paraburkholderia phymatum STM815", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000020045.1", "bioproject": "PRJNA224116", "biosample": "SAMN02598384", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "391038", "species_taxid": "148447", "organism_name": "Paraburkholderia phymatum STM815", "infraspecific_name": "strain=STM815", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2008/04/22", "asm_name": "ASM2004v1", "asm_submitter": "US DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000020045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/020/045/GCF_000020045.1_ASM2004v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8676562", "genome_size_ungapped": "8676562", "gc_percent": "62.500000", "replicon_count": "4", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000020045.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "7917", "protein_coding_gene_count": "7534", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2008-04-22", "dateModified": "2008-04-22", "datePublished": "2008-04-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraburkholderia phymatum STM815" ], "sample_taxid": [ "391038" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "2.404 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8676562", "Number of Sequences": "4", "Longest Sequences (bp)": "3479187", "N50 (bp)": "2697374", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.3", "Number of CDSs": "7801", "Average Protein Length": "313.0", "Coding Ratio (%)": "84.4", "Number of rRNAs": "12", "Number of tRNAs": "70", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraburkholderia phymatum", "strain": "strain=STM815", "accession": "GCA_000020045.1", "taxid": 148447, "species_taxid": 148447, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2885, "total_fragments": 2890, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paraburkholderia phymatum", "strain": "strain=LMG 21445", "accession": "GCA_902833665.1", "taxid": 148447, "species_taxid": 148447, "relation_to_type": "type", "validated": true, "ani": 99.9827, "matched_fragments": 2832, "total_fragments": 2890, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paraburkholderia sabiae", "strain": "strain=LMG 24235", "accession": "GCA_904848645.1", "taxid": 273251, "species_taxid": 273251, "relation_to_type": "type", "validated": true, "ani": 89.187, "matched_fragments": 2100, "total_fragments": 2890, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia azotifigens", "strain": "strain=NF 2-5-3", "accession": "GCA_007995085.1", "taxid": 2057004, "species_taxid": 2057004, "relation_to_type": "type", "validated": true, "ani": 89.0594, "matched_fragments": 2121, "total_fragments": 2890, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia terrae", "strain": "strain=NBRC 100964", "accession": "GCA_000739835.1", "taxid": 311230, "species_taxid": 311230, "relation_to_type": "type", "validated": true, "ani": 87.1048, "matched_fragments": 1894, "total_fragments": 2890, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia hospita", "strain": "strain=LMG 20598", "accession": "GCA_902833685.1", "taxid": 169430, "species_taxid": 169430, "relation_to_type": "type", "validated": true, "ani": 87.0805, "matched_fragments": 2000, "total_fragments": 2890, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia diazotrophica", "strain": "strain=LMG 26031", "accession": "GCA_900108945.1", "taxid": 667676, "species_taxid": 667676, "relation_to_type": "type", "validated": true, "ani": 86.549, "matched_fragments": 1838, "total_fragments": 2890, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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