{
    "type": "genome",
    "identifier": "GCF_000020645.1",
    "organism": "Pelodictyon phaeoclathratiforme BU-1",
    "title": "Pelodictyon phaeoclathratiforme BU-1",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000020645.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02598283",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "324925",
        "species_taxid": "34090",
        "organism_name": "Pelodictyon phaeoclathratiforme BU-1",
        "infraspecific_name": "strain=BU-1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2008/07/18",
        "asm_name": "ASM2064v1",
        "asm_submitter": "US DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000020645.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/020/645/GCF_000020645.1_ASM2064v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3018238",
        "genome_size_ungapped": "3018238",
        "gc_percent": "48.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000020645.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "2922",
        "protein_coding_gene_count": "2784",
        "non_coding_gene_count": "61",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2008-07-18",
    "dateModified": "2008-07-18",
    "datePublished": "2008-07-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pelodictyon phaeoclathratiforme BU-1"
        ],
        "sample_taxid": [
            "324925"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.850 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3018238",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3018238",
        "N50 (bp)": "3018238",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "48.1",
        "Number of CDSs": "2780",
        "Average Protein Length": "312.4",
        "Coding Ratio (%)": "86.3",
        "Number of rRNAs": "6",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Pelodictyon phaeoclathratiforme",
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                "accession": "GCA_000020645.1",
                "taxid": 34090,
                "species_taxid": 34090,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1003,
                "total_fragments": 1006,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Chlorobium phaeobacteroides",
                "strain": "strain=DSM 266",
                "accession": "GCA_000015125.1",
                "taxid": 1096,
                "species_taxid": 1096,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2868,
                "matched_fragments": 243,
                "total_fragments": 1006,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlorobium ferrooxidans",
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                "accession": "GCA_000168715.1",
                "taxid": 84205,
                "species_taxid": 84205,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlorobium limicola",
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                "accession": "GCA_000020465.1",
                "taxid": 1092,
                "species_taxid": 1092,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2745,
                "matched_fragments": 178,
                "total_fragments": 1006,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlorobaculum tepidum",
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                "accession": "GCA_000006985.1",
                "taxid": 1097,
                "species_taxid": 1097,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7083,
                "matched_fragments": 70,
                "total_fragments": 1006,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pelodictyon luteolum",
                "strain": "strain=DSM 273",
                "accession": "GCA_000012485.1",
                "taxid": 1100,
                "species_taxid": 1100,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.293,
                "matched_fragments": 115,
                "total_fragments": 1006,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prosthecochloris aestuarii",
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                "accession": "GCA_000020625.1",
                "taxid": 1102,
                "species_taxid": 1102,
                "relation_to_type": "type",
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                "ani": 77.2103,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlorobaculum thiosulfatiphilum",
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                "accession": "GCA_006265165.1",
                "taxid": 115852,
                "species_taxid": 115852,
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                "ani_threshold": 95,
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            }
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                "accession": "GCF_000020645.1",
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            },
            {
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                "matched_fragments": 582,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium",
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    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}