{ "type": "genome", "identifier": "GCF_000021325.1", "organism": "Gluconacetobacter diazotrophicus PA1 5", "title": "Gluconacetobacter diazotrophicus PA1 5", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US DOE Joint Genome Institute (JGI-PGF)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000021325.1", "bioproject": "PRJNA224116", "biosample": "SAMN02598444", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "272568", "species_taxid": "33996", "organism_name": "Gluconacetobacter diazotrophicus PA1 5", "infraspecific_name": "strain=PAl 5; ATCC 49037", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2008/10/16", "asm_name": "ASM2132v1", "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)", "gbrs_paired_asm": "GCA_000021325.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/021/325/GCF_000021325.1_ASM2132v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3914947", "genome_size_ungapped": "3914947", "gc_percent": "66.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000021325.1-RS_2024_12_22", "annotation_date": "2024-12-22", "total_gene_count": "3710", "protein_coding_gene_count": "3574", "non_coding_gene_count": "71", "pubmed_id": "21304715" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2008-10-16", "dateModified": "2008-10-16", "datePublished": "2008-10-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Gluconacetobacter diazotrophicus PA1 5" ], "sample_taxid": [ "272568" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.068 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3914947", "Number of Sequences": "2", "Longest Sequences (bp)": "3887492", "N50 (bp)": "3887492", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.3", "Number of CDSs": "3685", "Average Protein Length": "318.3", "Coding Ratio (%)": "89.9", "Number of rRNAs": "12", "Number of tRNAs": "62", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gluconacetobacter diazotrophicus", "strain": "strain=PAl 5; ATCC 49037", "accession": "GCA_000021325.1", "taxid": 33996, "species_taxid": 33996, 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"total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter potus", "strain": "strain=R-71646", "accession": "GCA_015244705.1", "taxid": 2724927, "species_taxid": 2724927, "relation_to_type": "type", "validated": true, "ani": 78.1834, "matched_fragments": 218, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidiphilium iwatense", "strain": "strain=KCTC 23505", "accession": "GCA_021556475.1", "taxid": 768198, "species_taxid": 768198, "relation_to_type": "type", "validated": true, "ani": 77.6949, "matched_fragments": 198, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Asaia lannensis", "strain": "strain=NBRC 102526", "accession": "GCA_024054035.1", "taxid": 415421, "species_taxid": 415421, "relation_to_type": "type", "validated": true, "ani": 77.5075, "matched_fragments": 174, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovastum atsumiense", "strain": "strain=G2-11", "accession": "GCA_937425535.1", "taxid": 504468, "species_taxid": 504468, "relation_to_type": "type", "validated": true, "ani": 77.4265, "matched_fragments": 350, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000021325.1", "gtdb_species": "s__Gluconacetobacter diazotrophicus", "ani": 100.0, "matched_fragments": 1302, "total_fragments": 1304, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconacetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.14", "min_intra_species_ani": "98.86", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_014174305.1", 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