{ "type": "genome", "identifier": "GCF_000021925.1", "organism": "Desulfitobacterium hafniense DCB-2", "title": "Desulfitobacterium hafniense DCB-2", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000021925.1", "bioproject": "PRJNA224116", "biosample": "SAMN02598433", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "272564", "species_taxid": "49338", "organism_name": "Desulfitobacterium hafniense DCB-2", "infraspecific_name": "strain=DCB-2", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2009/01/05", "asm_name": "ASM2192v1", "asm_submitter": "US DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000021925.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/021/925/GCF_000021925.1_ASM2192v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5279134", "genome_size_ungapped": "5279134", "gc_percent": "47.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000021925.1-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "5015", "protein_coding_gene_count": "4870", "non_coding_gene_count": "93", "pubmed_id": "22316246" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2009-01-05", "dateModified": "2009-01-05", "datePublished": "2009-01-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfitobacterium hafniense DCB-2" ], "sample_taxid": [ "272564" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.499 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5279134", "Number of Sequences": "1", "Longest Sequences (bp)": "5279134", "N50 (bp)": "5279134", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.5", "Number of CDSs": "4975", "Average Protein Length": "306.3", "Coding Ratio (%)": "86.6", "Number of rRNAs": "15", "Number of tRNAs": "76", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfitobacterium hafniense", "strain": "strain=DCB-2", "accession": "GCA_000021925.1", "taxid": 49338, "species_taxid": 49338, "relation_to_type": 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1759, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfitobacteriia;o__Desulfitobacteriales;f__Desulfitobacteriaceae;g__Desulfosporosinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012799495.1", "gtdb_species": "s__Desulfitobacterium sp012799495", "ani": 76.731, "matched_fragments": 68, "total_fragments": 1759, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfitobacteriia;o__Desulfitobacteriales;f__Desulfitobacteriaceae;g__Desulfitobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.301, "doubling_h": 0.522, "growth_tmp": 35.5, 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