{ "type": "genome", "identifier": "GCF_000022085.1", "organism": "Methylobacterium nodulans ORS 2060", "title": "Methylobacterium nodulans ORS 2060", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US DOE Joint Genome Institute (JGI-PGF)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000022085.1", "bioproject": "PRJNA224116", "biosample": "SAMN00000043", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "460265", "species_taxid": "114616", "organism_name": "Methylobacterium nodulans ORS 2060", "infraspecific_name": "strain=ORS 2060", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2009/01/12", "asm_name": "ASM2208v1", "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)", "gbrs_paired_asm": "GCA_000022085.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/022/085/GCF_000022085.1_ASM2208v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8839022", "genome_size_ungapped": "8839022", "gc_percent": "68.500000", "replicon_count": "8", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000022085.1-RS_2024_04_23", "annotation_date": "2024-04-23", "total_gene_count": "8721", "protein_coding_gene_count": "8172", "non_coding_gene_count": "97", "pubmed_id": "22887658" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2009-01-12", "dateModified": "2009-01-12", "datePublished": "2009-01-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylobacterium nodulans ORS 2060" ], "sample_taxid": [ "460265" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "2.405 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8839022", "Number of Sequences": "8", "Longest Sequences (bp)": "7772460", "N50 (bp)": "7772460", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.4", "Number of CDSs": "8851", "Average Protein Length": "275.6", "Coding Ratio (%)": "82.8", "Number of rRNAs": "14", "Number of tRNAs": "81", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylobacterium nodulans", "strain": "strain=ORS 2060", "accession": "GCA_000022085.1", "taxid": 114616, "species_taxid": 114616, "relation_to_type": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oryzihabitans", "strain": "strain=TER-1", "accession": "GCA_004004555.2", "taxid": 2499852, "species_taxid": 2499852, "relation_to_type": "type", "validated": true, "ani": 82.6379, "matched_fragments": 1208, "total_fragments": 2942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terricola", "strain": "strain=17Sr1-39", "accession": "GCA_006151805.1", "taxid": 2583531, "species_taxid": 2583531, "relation_to_type": "type", "validated": true, "ani": 82.5541, "matched_fragments": 1294, "total_fragments": 2942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium aquaticum", "strain": "strain=DSM 16371", "accession": "GCA_001043915.1", "taxid": 270351, "species_taxid": 270351, "relation_to_type": "type", "validated": true, "ani": 82.3585, "matched_fragments": 1161, "total_fragments": 2942, "ani_threshold": 95, "status": 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"strain": "strain=10.2.2", "accession": "GCA_004919685.1", "taxid": 1085774, "species_taxid": 1085774, "relation_to_type": "type", "validated": true, "ani": 76.7101, "matched_fragments": 359, "total_fragments": 2942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium qingshengii", "strain": "strain=CGMCC 1.12097", "accession": "GCA_900103325.1", "taxid": 1165689, "species_taxid": 1165689, "relation_to_type": "type", "validated": true, "ani": 76.6718, "matched_fragments": 309, "total_fragments": 2942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer mexicanus", "strain": "strain=DSM 18446", "accession": "GCA_017873105.1", "taxid": 375549, "species_taxid": 375549, "relation_to_type": "type", "validated": true, "ani": 76.6497, "matched_fragments": 264, "total_fragments": 2942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas goettingensis", "strain": "strain=LVF2", "accession": 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