{
    "type": "genome",
    "identifier": "GCF_000023145.1",
    "organism": "Corynebacterium kroppenstedtii DSM 44385",
    "title": "Corynebacterium kroppenstedtii DSM 44385",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Bielefeld University, Center for Biotechnology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000023145.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02603033",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "645127",
        "species_taxid": "161879",
        "organism_name": "Corynebacterium kroppenstedtii DSM 44385",
        "infraspecific_name": "strain=DSM 44385",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2009/05/19",
        "asm_name": "ASM2314v1",
        "asm_submitter": "Bielefeld University, Center for Biotechnology",
        "gbrs_paired_asm": "GCA_000023145.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/023/145/GCF_000023145.1_ASM2314v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2446804",
        "genome_size_ungapped": "2446804",
        "gc_percent": "57.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000023145.1-RS_2024_08_12",
        "annotation_date": "2024-08-12",
        "total_gene_count": "2114",
        "protein_coding_gene_count": "2024",
        "non_coding_gene_count": "58",
        "pubmed_id": "18430482"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2009-05-19",
    "dateModified": "2009-05-19",
    "datePublished": "2009-05-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Corynebacterium kroppenstedtii DSM 44385"
        ],
        "sample_taxid": [
            "645127"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.697 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2446804",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2446804",
        "N50 (bp)": "2446804",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "57.5",
        "Number of CDSs": "2107",
        "Average Protein Length": "333.0",
        "Coding Ratio (%)": "86.0",
        "Number of rRNAs": "9",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Corynebacterium kroppenstedtii",
                "strain": "strain=DSM 44385",
                "accession": "GCA_000023145.1",
                "taxid": 161879,
                "species_taxid": 161879,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 813,
                "total_fragments": 815,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium kroppenstedtii",
                "strain": "strain=FDAARGOS_1192",
                "accession": "GCA_016889365.1",
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                "species_taxid": 161879,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9948,
                "matched_fragments": 814,
                "total_fragments": 815,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium pseudokroppenstedtii",
                "strain": "strain=MC-17X",
                "accession": "GCA_019754945.1",
                "taxid": 2804917,
                "species_taxid": 2804917,
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                "validated": true,
                "ani": 93.6377,
                "matched_fragments": 778,
                "total_fragments": 815,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium parakroppenstedtii",
                "strain": "strain=MC-26",
                "accession": "GCA_019754935.1",
                "taxid": 2828363,
                "species_taxid": 2828363,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.2341,
                "matched_fragments": 760,
                "total_fragments": 815,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium senegalense",
                "strain": "strain=Marseille-P4329",
                "accession": "GCA_900411315.1",
                "taxid": 2080750,
                "species_taxid": 2080750,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.782,
                "matched_fragments": 64,
                "total_fragments": 815,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium kalinowskii",
                "strain": "strain=1959",
                "accession": "GCA_009734385.1",
                "taxid": 2675216,
                "species_taxid": 2675216,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5684,
                "matched_fragments": 58,
                "total_fragments": 815,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium aquilae",
                "strain": "strain=S-613",
                "accession": "GCA_001941445.1",
                "taxid": 203263,
                "species_taxid": 203263,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5114,
                "matched_fragments": 79,
                "total_fragments": 815,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium freneyi",
                "strain": "strain=DSM 44506",
                "accession": "GCA_017876455.1",
                "taxid": 134034,
                "species_taxid": 134034,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2774,
                "matched_fragments": 76,
                "total_fragments": 815,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.54,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000023145.1",
                "gtdb_species": "s__Corynebacterium kroppenstedtii",
                "ani": 100.0,
                "matched_fragments": 814,
                "total_fragments": 815,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_016889405.1",
                "gtdb_species": "s__Corynebacterium kroppenstedtii_C",
                "ani": 94.1278,
                "matched_fragments": 782,
                "total_fragments": 815,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001552955.1",
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                "ani": 93.2095,
                "matched_fragments": 768,
                "total_fragments": 815,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
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                "min_intra_species_ani": "99.91",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_003243515.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016894245.1",
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                "matched_fragments": 761,
                "total_fragments": 815,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.90",
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                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019209935.1",
                "gtdb_species": "s__Corynebacterium sp019209935",
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                "matched_fragments": 69,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.84",
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                "mean_intra_species_af": "0.96",
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                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.275,
        "cell_length": 0.068,
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        "growth_tmp": 37.0,
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        "optimum_ph": 7.292,
        "genome_size": 2482875.75,
        "gc_content": 57.5,
        "coding_genes": 1985.333,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 46.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.75,
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        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Corynebacterium",
        "kroppenstedtii",
        "DSM",
        "44385"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}