{
    "type": "genome",
    "identifier": "GCF_000023445.1",
    "organism": "Maridesulfovibrio salexigens DSM 2638",
    "title": "Maridesulfovibrio salexigens DSM 2638",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US DOE Joint Genome Institute (JGI-PGF)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000023445.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00001870",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "526222",
        "species_taxid": "880",
        "organism_name": "Maridesulfovibrio salexigens DSM 2638",
        "infraspecific_name": "strain=DSM 2638",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2009/06/26",
        "asm_name": "ASM2344v1",
        "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)",
        "gbrs_paired_asm": "GCA_000023445.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/023/445/GCF_000023445.1_ASM2344v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4289847",
        "genome_size_ungapped": "4289847",
        "gc_percent": "47.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000023445.1-RS_2024_05_01",
        "annotation_date": "2024-05-01",
        "total_gene_count": "3935",
        "protein_coding_gene_count": "3815",
        "non_coding_gene_count": "108",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2009-06-26",
    "dateModified": "2009-06-26",
    "datePublished": "2009-06-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Maridesulfovibrio salexigens DSM 2638"
        ],
        "sample_taxid": [
            "526222"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.220 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4289847",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4289847",
        "N50 (bp)": "4289847",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.1",
        "Number of CDSs": "3837",
        "Average Protein Length": "329.1",
        "Coding Ratio (%)": "88.3",
        "Number of rRNAs": "15",
        "Number of tRNAs": "89",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Maridesulfovibrio salexigens",
                "strain": "strain=DSM 2638",
                "accession": "GCA_000023445.1",
                "taxid": 880,
                "species_taxid": 880,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1428,
                "total_fragments": 1429,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Maridesulfovibrio hydrothermalis",
                "strain": "strain=AM13",
                "accession": "GCA_000331025.1",
                "taxid": 191026,
                "species_taxid": 191026,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1646,
                "matched_fragments": 516,
                "total_fragments": 1429,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Maridesulfovibrio hydrothermalis",
                "strain": "strain=DSM 14728",
                "accession": "GCA_000425245.1",
                "taxid": 191026,
                "species_taxid": 191026,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1154,
                "matched_fragments": 498,
                "total_fragments": 1429,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Maridesulfovibrio zosterae",
                "strain": "strain=DSM 11974",
                "accession": "GCA_000425265.1",
                "taxid": 82171,
                "species_taxid": 82171,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8124,
                "matched_fragments": 418,
                "total_fragments": 1429,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudodesulfovibrio tunisiensis",
                "strain": "strain=RB22",
                "accession": "GCA_022809775.1",
                "taxid": 463192,
                "species_taxid": 463192,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0068,
                "matched_fragments": 64,
                "total_fragments": 1429,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Maridesulfovibrio frigidus",
                "strain": "strain=DSM 17176",
                "accession": "GCA_000711735.1",
                "taxid": 340956,
                "species_taxid": 340956,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.494,
                "matched_fragments": 233,
                "total_fragments": 1429,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halodesulfovibrio spirochaetisodalis",
                "strain": "strain=JC271",
                "accession": "GCA_001672295.1",
                "taxid": 1560234,
                "species_taxid": 1560234,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4497,
                "matched_fragments": 63,
                "total_fragments": 1429,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Maridesulfovibrio bastinii",
                "strain": "strain=DSM 16055",
                "accession": "GCA_000429985.1",
                "taxid": 47157,
                "species_taxid": 47157,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1497,
                "matched_fragments": 176,
                "total_fragments": 1429,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudodesulfovibrio sediminis",
                "strain": "strain=SF6",
                "accession": "GCA_020886695.1",
                "taxid": 2810563,
                "species_taxid": 2810563,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0446,
                "matched_fragments": 80,
                "total_fragments": 1429,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paucidesulfovibrio longus",
                "strain": "strain=DSM 6739",
                "accession": "GCA_000420485.1",
                "taxid": 889,
                "species_taxid": 889,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0528,
                "matched_fragments": 55,
                "total_fragments": 1429,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000023445.1",
                "gtdb_species": "s__Maridesulfovibrio salexigens",
                "ani": 100.0,
                "matched_fragments": 1428,
                "total_fragments": 1429,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Maridesulfovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_010470665.1",
                "gtdb_species": "s__Maridesulfovibrio sp010470665",
                "ani": 83.7495,
                "matched_fragments": 1050,
                "total_fragments": 1429,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Maridesulfovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004923195.1",
                "gtdb_species": "s__Maridesulfovibrio sp004923195",
                "ani": 83.401,
                "matched_fragments": 1104,
                "total_fragments": 1429,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Maridesulfovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010470675.1",
                "gtdb_species": "s__Maridesulfovibrio sp010470675",
                "ani": 83.35,
                "matched_fragments": 964,
                "total_fragments": 1429,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Maridesulfovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002340305.1",
                "gtdb_species": "s__Maridesulfovibrio sp002340305",
                "ani": 83.2666,
                "matched_fragments": 719,
                "total_fragments": 1429,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Maridesulfovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.12",
                "min_intra_species_ani": "99.12",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_006210265.1",
                "gtdb_species": "s__Maridesulfovibrio sp006210265",
                "ani": 77.301,
                "matched_fragments": 216,
                "total_fragments": 1429,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Maridesulfovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Maridesulfovibrio",
        "salexigens",
        "DSM",
        "2638"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}