{
    "type": "genome",
    "identifier": "GCF_000023985.1",
    "organism": "Methanocaldococcus fervens AG86",
    "title": "Methanocaldococcus fervens AG86",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US DOE Joint Genome Institute (JGI-PGF)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000023985.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02598490",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "573064",
        "species_taxid": "83171",
        "organism_name": "Methanocaldococcus fervens AG86",
        "infraspecific_name": "strain=AG86",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2009/08/28",
        "asm_name": "ASM2398v1",
        "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)",
        "gbrs_paired_asm": "GCA_000023985.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/023/985/GCF_000023985.1_ASM2398v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "1507251",
        "genome_size_ungapped": "1507251",
        "gc_percent": "32.000000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000023985.1-RS_2024_10_21",
        "annotation_date": "2024-10-21",
        "total_gene_count": "1662",
        "protein_coding_gene_count": "1592",
        "non_coding_gene_count": "45",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2009-08-28",
    "dateModified": "2009-08-28",
    "datePublished": "2009-08-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methanocaldococcus fervens AG86"
        ],
        "sample_taxid": [
            "573064"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "None"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.413 MB",
        "sample_ph_range": {
            "min": 65.0,
            "max": 65.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1507251",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "1485061",
        "N50 (bp)": "1485061",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "32.2",
        "Number of CDSs": "1626",
        "Average Protein Length": "277.8",
        "Coding Ratio (%)": "89.9",
        "Number of rRNAs": "6",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "7"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Methanocaldococcus fervens",
                "strain": "strain=AG86",
                "accession": "GCA_000023985.1",
                "taxid": 83171,
                "species_taxid": 83171,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 501,
                "total_fragments": 502,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Methanocaldococcus bathoardescens",
                "strain": "strain=JH146",
                "accession": "GCA_000739065.1",
                "taxid": 1301915,
                "species_taxid": 1301915,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.5949,
                "matched_fragments": 394,
                "total_fragments": 502,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanocaldococcus jannaschii",
                "strain": "strain=DSM 2661",
                "accession": "GCA_000091665.1",
                "taxid": 2190,
                "species_taxid": 2190,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3214,
                "matched_fragments": 392,
                "total_fragments": 502,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanocaldococcus vulcanius",
                "strain": "strain=M7",
                "accession": "GCA_000024625.1",
                "taxid": 73913,
                "species_taxid": 73913,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4425,
                "matched_fragments": 254,
                "total_fragments": 502,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanotorris formicicus",
                "strain": "strain=Mc-S-70",
                "accession": "GCA_000243455.2",
                "taxid": 213185,
                "species_taxid": 213185,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1557,
                "matched_fragments": 123,
                "total_fragments": 502,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanocaldococcus infernus",
                "strain": "strain=ME",
                "accession": "GCA_000092305.1",
                "taxid": 67760,
                "species_taxid": 67760,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3142,
                "matched_fragments": 92,
                "total_fragments": 502,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000023985.1",
                "gtdb_species": "s__Methanocaldococcus fervens",
                "ani": 100.0,
                "matched_fragments": 501,
                "total_fragments": 502,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_A;c__Methanococci;o__Methanococcales;f__Methanocaldococcaceae;g__Methanocaldococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000739065.1",
                "gtdb_species": "s__Methanocaldococcus bathoardescens",
                "ani": 84.6261,
                "matched_fragments": 393,
                "total_fragments": 502,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_A;c__Methanococci;o__Methanococcales;f__Methanocaldococcaceae;g__Methanocaldococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000091665.1",
                "gtdb_species": "s__Methanocaldococcus jannaschii",
                "ani": 83.3049,
                "matched_fragments": 393,
                "total_fragments": 502,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_A;c__Methanococci;o__Methanococcales;f__Methanocaldococcaceae;g__Methanocaldococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000025525.1",
                "gtdb_species": "s__Methanocaldococcus sp000025525",
                "ani": 82.9751,
                "matched_fragments": 400,
                "total_fragments": 502,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_A;c__Methanococci;o__Methanococcales;f__Methanocaldococcaceae;g__Methanocaldococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902827205.1",
                "gtdb_species": "s__Methanocaldococcus sp902827205",
                "ani": 79.5833,
                "matched_fragments": 307,
                "total_fragments": 502,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_A;c__Methanococci;o__Methanococcales;f__Methanocaldococcaceae;g__Methanocaldococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.43",
                "min_intra_species_ani": "97.43",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_013153845.1",
                "gtdb_species": "s__Methanocaldococcus sp013153845",
                "ani": 79.1773,
                "matched_fragments": 211,
                "total_fragments": 502,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_A;c__Methanococci;o__Methanococcales;f__Methanocaldococcaceae;g__Methanocaldococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.0,
        "cell_length": 0.0,
        "doubling_h": -0.482,
        "growth_tmp": 85.0,
        "optimum_tmp": 77.0,
        "optimum_ph": 6.6,
        "genome_size": 1507250.8,
        "gc_content": 32.403,
        "coding_genes": 1561.667,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 37.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Methanocaldococcus",
        "fervens",
        "AG86"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}