{ "type": "genome", "identifier": "GCF_000024025.1", "organism": "Catenulispora acidiphila DSM 44928", "title": "Catenulispora acidiphila DSM 44928", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US DOE Joint Genome Institute (JGI-PGF)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000024025.1", "bioproject": "PRJNA224116", "biosample": "SAMN02598445", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "479433", "species_taxid": "304895", "organism_name": "Catenulispora acidiphila DSM 44928", "infraspecific_name": "strain=DSM 44928", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2009/08/21", "asm_name": "ASM2402v1", "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)", "gbrs_paired_asm": "GCA_000024025.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/024/025/GCF_000024025.1_ASM2402v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10467782", "genome_size_ungapped": "10467782", "gc_percent": "70.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000024025.1-RS_2024_11_06", "annotation_date": "2024-11-06", "total_gene_count": "9136", "protein_coding_gene_count": "8934", "non_coding_gene_count": "72", "pubmed_id": "21304647" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2009-08-21", "dateModified": "2009-08-21", "datePublished": "2009-08-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Catenulispora acidiphila DSM 44928" ], "sample_taxid": [ "479433" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "Italy" ], "sample_host_location_id": [], "data_size": "2.826 MB", "sample_ph_range": { "min": 6.0, "max": 6.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 5.21, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10467782", "Number of Sequences": "1", "Longest Sequences (bp)": "10467782", "N50 (bp)": "10467782", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.8", "Number of CDSs": "9301", "Average Protein Length": "336.8", "Coding Ratio (%)": "89.8", "Number of rRNAs": "9", "Number of tRNAs": "82", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Catenulispora acidiphila", "strain": "strain=DSM 44928", "accession": "GCA_000024025.1", "taxid": 304895, "species_taxid": 304895, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora setae", "strain": "strain=KM-6054", "accession": "GCA_000269985.1", "taxid": 2066, "species_taxid": 2066, "relation_to_type": "type", "validated": true, "ani": 77.0391, "matched_fragments": 1032, "total_fragments": 3489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseocarneus", "strain": "strain=JCM 4580", "accession": "GCA_014655595.1", "taxid": 51201, "species_taxid": 51201, "relation_to_type": "type", "validated": true, "ani": 77.0083, "matched_fragments": 726, "total_fragments": 3489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spinosus", "strain": "strain=SBTS01", "accession": "GCA_020400655.1", "taxid": 2872623, "species_taxid": 2872623, "relation_to_type": "type", "validated": true, "ani": 76.8939, "matched_fragments": 831, "total_fragments": 3489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces barringtoniae", "strain": "strain=JA03", "accession": "GCA_020819595.1", "taxid": 2892029, "species_taxid": 2892029, "relation_to_type": "type", "validated": true, "ani": 76.8711, "matched_fragments": 807, "total_fragments": 3489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allostreptomyces psammosilenae", "strain": "strain=DSM 42178", "accession": "GCA_013407765.1", "taxid": 1892865, "species_taxid": 1892865, "relation_to_type": "type", "validated": true, "ani": 76.8561, "matched_fragments": 771, "total_fragments": 3489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces albireticuli", "strain": "strain=NRRL B1670", "accession": "GCA_021228125.1", "taxid": 1940, "species_taxid": 1940, "relation_to_type": "type", "validated": true, "ani": 76.73, "matched_fragments": 754, "total_fragments": 3489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Embleya hyalina", "strain": 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