{
    "type": "genome",
    "identifier": "GCF_000024225.1",
    "organism": "Lancefieldella parvula DSM 20469",
    "title": "Lancefieldella parvula DSM 20469",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US DOE Joint Genome Institute (JGI-PGF)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000024225.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00001907",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "521095",
        "species_taxid": "1382",
        "organism_name": "Lancefieldella parvula DSM 20469",
        "infraspecific_name": "strain=DSM 20469",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2009/09/09",
        "asm_name": "ASM2422v1",
        "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)",
        "gbrs_paired_asm": "GCA_000024225.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/024/225/GCF_000024225.1_ASM2422v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1543805",
        "genome_size_ungapped": "1543805",
        "gc_percent": "45.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000024225.1-RS_2024_05_01",
        "annotation_date": "2024-05-01",
        "total_gene_count": "1409",
        "protein_coding_gene_count": "1355",
        "non_coding_gene_count": "51",
        "pubmed_id": "21304653"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2009-09-09",
    "dateModified": "2009-09-09",
    "datePublished": "2009-09-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lancefieldella parvula DSM 20469"
        ],
        "sample_taxid": [
            "521095"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.440 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1543805",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "1543805",
        "N50 (bp)": "1543805",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "45.7",
        "Number of CDSs": "1376",
        "Average Protein Length": "334.6",
        "Coding Ratio (%)": "89.5",
        "Number of rRNAs": "3",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Lancefieldella parvula",
                "strain": "strain=DSM 20469",
                "accession": "GCA_000024225.1",
                "taxid": 1382,
                "species_taxid": 1382,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 514,
                "total_fragments": 514,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lancefieldella rimae",
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                "accession": "GCA_001438885.1",
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                "species_taxid": 1383,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.625,
                "matched_fragments": 116,
                "total_fragments": 514,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lancefieldella rimae",
                "strain": "strain=ATCC 49626",
                "accession": "GCA_000174015.1",
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                "species_taxid": 1383,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Atopobium fossor",
                "strain": "strain=DSM 15642",
                "accession": "GCA_000483125.1",
                "taxid": 39487,
                "species_taxid": 39487,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2615,
                "matched_fragments": 55,
                "total_fragments": 514,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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            {
                "accession": "GCF_000024225.1",
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                "total_fragments": 514,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Lancefieldella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.26",
                "min_intra_species_ani": "96.26",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_015259035.1",
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                "matched_fragments": 281,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Lancefieldella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.13",
                "min_intra_species_ani": "95.13",
                "mean_intra_species_af": "0.67",
                "min_intra_species_af": "0.67",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
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                "matched_fragments": 423,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000564995.1",
                "gtdb_species": "s__Lancefieldella sp000564995",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Lancefieldella",
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                "mean_intra_species_ani": "95.37",
                "min_intra_species_ani": "95.06",
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                "num_clustered_genomes": 23,
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            },
            {
                "accession": "GCA_015259105.1",
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                "mean_intra_species_ani": "95.21",
                "min_intra_species_ani": "95.21",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCA_015258605.1",
                "gtdb_species": "s__Lancefieldella sp015258605",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Lancefieldella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015259045.1",
                "gtdb_species": "s__Lancefieldella sp015259045",
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                "mean_intra_species_ani": "95.43",
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                "mean_intra_species_af": "0.88",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900555335.1",
                "gtdb_species": "s__Lancefieldella sp900555335",
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                "matched_fragments": 300,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Lancefieldella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Lancefieldella",
        "parvula",
        "DSM",
        "20469"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}