{ "type": "genome", "identifier": "GCF_000024325.1", "organism": "Desulfohalobium retbaense DSM 5692", "title": "Desulfohalobium retbaense DSM 5692", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US DOE Joint Genome Institute (JGI-PGF)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000024325.1", "bioproject": "PRJNA224116", "biosample": "SAMN02598459", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "485915", "species_taxid": "45663", "organism_name": "Desulfohalobium retbaense DSM 5692", "infraspecific_name": "strain=DSM 5692", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2009/09/11", "asm_name": "ASM2432v1", "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)", "gbrs_paired_asm": "GCA_000024325.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/024/325/GCF_000024325.1_ASM2432v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2909567", "genome_size_ungapped": "2909567", "gc_percent": "57.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000024325.1-RS_2024_04_21", "annotation_date": "2024-04-21", "total_gene_count": "2547", "protein_coding_gene_count": "2472", "non_coding_gene_count": "60", "pubmed_id": "21304676" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2009-09-11", "dateModified": "2009-09-11", "datePublished": "2009-09-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfohalobium retbaense DSM 5692" ], "sample_taxid": [ "485915" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "Senegal: Lake Retba" ], "sample_host_location_id": [], "data_size": "0.820 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2909567", "Number of Sequences": "2", "Longest Sequences (bp)": "2864304", "N50 (bp)": "2864304", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.3", "Number of CDSs": "2562", "Average Protein Length": "319.8", "Coding Ratio (%)": "84.5", "Number of rRNAs": "6", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfohalobium retbaense", "strain": "strain=DSM 5692", "accession": "GCA_000024325.1", "taxid": 45663, 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95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002482565.1", "gtdb_species": "s__Solidesulfovibrio magneticus_B", "ani": 75.9727, "matched_fragments": 58, "total_fragments": 969, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Solidesulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001799475.1", "gtdb_species": "s__Humidesulfovibrio sp001799475", "ani": 75.9025, "matched_fragments": 57, "total_fragments": 969, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Humidesulfovibrio", "ani_circumscription_radius": 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