{ "type": "genome", "identifier": "GCF_000024345.1", "organism": "Kribbella flavida DSM 17836", "title": "Kribbella flavida DSM 17836", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US DOE Joint Genome Institute (JGI-PGF)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000024345.1", "bioproject": "PRJNA224116", "biosample": "SAMN02598447", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "479435", "species_taxid": "182640", "organism_name": "Kribbella flavida DSM 17836", "infraspecific_name": "strain=DSM 17836", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2010/01/13", "asm_name": "ASM2434v1", "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)", "gbrs_paired_asm": "GCA_000024345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/024/345/GCF_000024345.1_ASM2434v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7579488", "genome_size_ungapped": "7579488", "gc_percent": "70.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000024345.1-RS_2024_03_20", "annotation_date": "2024-03-20", "total_gene_count": "7131", "protein_coding_gene_count": "7033", "non_coding_gene_count": "62", "pubmed_id": "21304701" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2010-01-13", "dateModified": "2010-01-13", "datePublished": "2010-01-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Kribbella flavida DSM 17836" ], "sample_taxid": [ "479435" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "2.021 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7579488", "Number of Sequences": "1", "Longest Sequences (bp)": "7579488", "N50 (bp)": "7579488", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.6", "Number of CDSs": "7178", "Average Protein Length": "319.0", "Coding Ratio (%)": "90.6", "Number of rRNAs": "6", "Number of tRNAs": "72", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kribbella flavida", "strain": "strain=DSM 17836", "accession": "GCA_000024345.1", "taxid": 182640, "species_taxid": 182640, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2526, "total_fragments": 2526, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kribbella italica", "strain": "strain=DSM 28967", "accession": "GCA_014205135.1", "taxid": 1540520, "species_taxid": 1540520, "relation_to_type": "type", "validated": true, "ani": 86.0982, "matched_fragments": 1844, "total_fragments": 2526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella amoyensis", "strain": "strain=DSM 24683", "accession": "GCA_007828865.1", "taxid": 996641, "species_taxid": 996641, "relation_to_type": "type", "validated": true, "ani": 84.8613, "matched_fragments": 1690, "total_fragments": 2526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella turkmenica", "strain": "strain=16K104", "accession": "GCA_004348725.1", "taxid": 2530375, "species_taxid": 2530375, "relation_to_type": "type", "validated": true, "ani": 83.9215, "matched_fragments": 1454, "total_fragments": 2526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella catacumbae", "strain": "strain=DSM 19601", "accession": "GCA_000372465.1", "taxid": 460086, "species_taxid": 460086, "relation_to_type": "type", "validated": true, "ani": 83.6604, "matched_fragments": 1643, "total_fragments": 2526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella monticola", "strain": "strain=NEAU-SW521", "accession": "GCA_003261635.1", "taxid": 2185285, "species_taxid": 2185285, "relation_to_type": "type", "validated": true, "ani": 83.3907, "matched_fragments": 1600, "total_fragments": 2526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella capetownensis", "strain": "strain=YM53", "accession": "GCA_004331485.1", "taxid": 1572659, "species_taxid": 1572659, "relation_to_type": "type", "validated": true, "ani": 83.0157, "matched_fragments": 1546, "total_fragments": 2526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella shirazensis", "strain": "strain=DSM 45490", "accession": "GCA_011761605.1", "taxid": 1105143, "species_taxid": 1105143, "relation_to_type": "type", "validated": true, "ani": 82.882, "matched_fragments": 1516, "total_fragments": 2526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella aluminosa", "strain": "strain=DSM 18824", "accession": "GCA_017876295.1", "taxid": 416017, "species_taxid": 416017, "relation_to_type": "type", "validated": true, "ani": 82.7535, "matched_fragments": 1433, "total_fragments": 2526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella sindirgiensis", "strain": "strain=DSM 27082", "accession": "GCA_004331435.1", "taxid": 1124744, "species_taxid": 1124744, "relation_to_type": "type", "validated": true, "ani": 82.6913, "matched_fragments": 1496, "total_fragments": 2526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella speibonae", "strain": "strain=YM55", "accession": "GCA_004331375.1", "taxid": 1572660, "species_taxid": 1572660, "relation_to_type": "type", "validated": true, "ani": 82.6129, "matched_fragments": 1520, "total_fragments": 2526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella jiaozuonensis", "strain": "strain=NEAU-THZ27", "accession": "GCA_005233875.1", "taxid": 2575441, "species_taxid": 2575441, "relation_to_type": "type", "validated": true, "ani": 82.5773, "matched_fragments": 1471, "total_fragments": 2526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella antibiotica", "strain": "strain=JCM 13523", "accession": "GCA_004349055.1", "taxid": 190195, "species_taxid": 190195, "relation_to_type": "type", "validated": true, "ani": 81.9126, "matched_fragments": 1373, "total_fragments": 2526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panacis", "strain": "strain=G188", "accession": "GCA_019039255.1", "taxid": 2849501, "species_taxid": 2849501, "relation_to_type": "type", "validated": true, "ani": 78.1484, "matched_fragments": 635, "total_fragments": 2526, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000024345.1", "gtdb_species": "s__Kribbella flavida", "ani": 100.0, "matched_fragments": 2526, "total_fragments": 2526, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001984195.1", "gtdb_species": "s__Kribbella sp001984195", "ani": 87.144, "matched_fragments": 1940, "total_fragments": 2526, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014205135.1", "gtdb_species": "s__Kribbella italica", "ani": 86.0855, "matched_fragments": 1846, "total_fragments": 2526, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007828865.1", "gtdb_species": "s__Kribbella amoyensis", "ani": 84.8923, "matched_fragments": 1684, "total_fragments": 2526, "gtdb_taxonomy": 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Kribbella", "flavida", "DSM", "17836" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }