{
    "type": "genome",
    "identifier": "GCF_000024425.1",
    "organism": "Meiothermus ruber DSM 1279",
    "title": "Meiothermus ruber DSM 1279",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US DOE Joint Genome Institute (JGI-PGF)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000024425.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00002601",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "504728",
        "species_taxid": "277",
        "organism_name": "Meiothermus ruber DSM 1279",
        "infraspecific_name": "strain=DSM 1279",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2010/03/03",
        "asm_name": "ASM2442v1",
        "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)",
        "gbrs_paired_asm": "GCA_000024425.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/024/425/GCF_000024425.1_ASM2442v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3097457",
        "genome_size_ungapped": "3097457",
        "gc_percent": "63.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2023-04-24",
        "total_gene_count": "3125",
        "protein_coding_gene_count": "3046",
        "non_coding_gene_count": "56",
        "pubmed_id": "21304689"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2010-03-03",
    "dateModified": "2010-03-03",
    "datePublished": "2010-03-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Meiothermus ruber DSM 1279"
        ],
        "sample_taxid": [
            "504728"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.860 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3097457",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3097457",
        "N50 (bp)": "3097457",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "63.4",
        "Number of CDSs": "3084",
        "Average Protein Length": "306.2",
        "Coding Ratio (%)": "91.4",
        "Number of rRNAs": "6",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "7"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Meiothermus ruber",
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                "accession": "GCA_000024425.1",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1030,
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            },
            {
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                "total_fragments": 1032,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Meiothermus cerbereus",
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                "relation_to_type": "type",
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                "status": "below_threshold"
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            {
                "organism_name": "Meiothermus hypogaeus",
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                "species_taxid": 884155,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Meiothermus hypogaeus",
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                "accession": "GCA_003574035.1",
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                "species_taxid": 884155,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2609,
                "matched_fragments": 697,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Calidithermus chliarophilus",
                "strain": "strain=DSM 9957",
                "accession": "GCA_000430045.1",
                "taxid": 52023,
                "species_taxid": 52023,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6712,
                "matched_fragments": 499,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Calidithermus terrae",
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                "accession": "GCA_003574345.1",
                "taxid": 1408545,
                "species_taxid": 1408545,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4932,
                "matched_fragments": 445,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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        "gtdb_result": [
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                "accession": "GCF_000024425.1",
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                "total_fragments": 1032,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Meiothermus",
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                "min_intra_species_ani": "97.58",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCA_000482765.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Meiothermus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.41",
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                "num_clustered_genomes": 5,
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            },
            {
                "accession": "GCA_011327565.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Meiothermus",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000620065.1",
                "gtdb_species": "s__Meiothermus cerbereus",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_017497985.1",
                "gtdb_species": "s__Meiothermus sp017497985",
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                "mean_intra_species_ani": "N/A",
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            {
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_000430045.1",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "ruber",
        "DSM",
        "1279"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}