{
    "type": "genome",
    "identifier": "GCF_000024925.1",
    "organism": "Sanguibacter keddieii DSM 10542",
    "title": "Sanguibacter keddieii DSM 10542",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US DOE Joint Genome Institute (JGI-PGF)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000024925.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02598426",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "446469",
        "species_taxid": "60920",
        "organism_name": "Sanguibacter keddieii DSM 10542",
        "infraspecific_name": "strain=DSM 10542",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2009/11/19",
        "asm_name": "ASM2492v1",
        "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)",
        "gbrs_paired_asm": "GCA_000024925.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/024/925/GCF_000024925.1_ASM2492v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4253413",
        "genome_size_ungapped": "4253413",
        "gc_percent": "72.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000024925.1-RS_2024_05_01",
        "annotation_date": "2024-05-01",
        "total_gene_count": "3785",
        "protein_coding_gene_count": "3703",
        "non_coding_gene_count": "66",
        "pubmed_id": "21304646"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2009-11-19",
    "dateModified": "2009-11-19",
    "datePublished": "2009-11-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sanguibacter keddieii DSM 10542"
        ],
        "sample_taxid": [
            "446469"
        ],
        "sample_host_organism": [
            "Cow"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "None"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Spain"
        ],
        "sample_host_location_id": [],
        "data_size": "1.121 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4253413",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4253413",
        "N50 (bp)": "4253413",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "71.9",
        "Number of CDSs": "3740",
        "Average Protein Length": "343.2",
        "Coding Ratio (%)": "90.5",
        "Number of rRNAs": "12",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Sanguibacter keddieii",
                "strain": "strain=DSM 10542",
                "accession": "GCA_000024925.1",
                "taxid": 60920,
                "species_taxid": 60920,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1416,
                "total_fragments": 1417,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sanguibacter inulinus",
                "strain": "strain=DSM 100099",
                "accession": "GCA_013415325.1",
                "taxid": 60922,
                "species_taxid": 60922,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.7398,
                "matched_fragments": 1078,
                "total_fragments": 1417,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sanguibacter suarezii",
                "strain": "strain=NBRC 16159",
                "accession": "GCA_001552735.1",
                "taxid": 60921,
                "species_taxid": 60921,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.7198,
                "matched_fragments": 746,
                "total_fragments": 1417,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sanguibacter gelidistatuariae",
                "strain": "strain=ISLP-3",
                "accession": "GCA_900096585.1",
                "taxid": 1814289,
                "species_taxid": 1814289,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4856,
                "matched_fragments": 727,
                "total_fragments": 1417,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sanguibacter suaedae",
                "strain": "strain=YZGR15",
                "accession": "GCA_016342785.1",
                "taxid": 2795737,
                "species_taxid": 2795737,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0847,
                "matched_fragments": 632,
                "total_fragments": 1417,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sanguibacter antarcticus",
                "strain": "strain=DSM 18966",
                "accession": "GCA_002564005.1",
                "taxid": 372484,
                "species_taxid": 372484,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.406,
                "matched_fragments": 613,
                "total_fragments": 1417,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oerskovia douganii",
                "strain": "strain=Sa1BUA8",
                "accession": "GCA_015142735.1",
                "taxid": 2762210,
                "species_taxid": 2762210,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9691,
                "matched_fragments": 593,
                "total_fragments": 1417,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oerskovia enterophila",
                "strain": "strain=DSM 43852",
                "accession": "GCA_001692445.1",
                "taxid": 43678,
                "species_taxid": 43678,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9559,
                "matched_fragments": 604,
                "total_fragments": 1417,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oerskovia rustica",
                "strain": "strain=Sa4CUA1",
                "accession": "GCA_014836555.1",
                "taxid": 2762237,
                "species_taxid": 2762237,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8454,
                "matched_fragments": 629,
                "total_fragments": 1417,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oerskovia merdavium",
                "strain": "strain=Sa2CUA9",
                "accession": "GCA_014836755.1",
                "taxid": 2762227,
                "species_taxid": 2762227,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7956,
                "matched_fragments": 615,
                "total_fragments": 1417,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinotalea solisilvae",
                "strain": "strain=KACC 19191",
                "accession": "GCA_016464425.1",
                "taxid": 2072922,
                "species_taxid": 2072922,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9432,
                "matched_fragments": 573,
                "total_fragments": 1417,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Isoptericola jiangsuensis",
                "strain": "strain=DSM 21863",
                "accession": "GCA_002563715.1",
                "taxid": 548579,
                "species_taxid": 548579,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9064,
                "matched_fragments": 551,
                "total_fragments": 1417,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas iranensis",
                "strain": "strain=NBRC 101100",
                "accession": "GCA_001552375.1",
                "taxid": 76862,
                "species_taxid": 76862,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.854,
                "matched_fragments": 561,
                "total_fragments": 1417,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas palmilytica",
                "strain": "strain=EW123",
                "accession": "GCA_021590045.1",
                "taxid": 2608402,
                "species_taxid": 2608402,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8189,
                "matched_fragments": 545,
                "total_fragments": 1417,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas hominis",
                "strain": "strain=DSM 9581",
                "accession": "GCA_014201095.1",
                "taxid": 156981,
                "species_taxid": 156981,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.7293,
                "matched_fragments": 611,
                "total_fragments": 1417,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas hominis",
                "strain": "strain=NBRC 16055",
                "accession": "GCA_007989225.1",
                "taxid": 156981,
                "species_taxid": 156981,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.7113,
                "matched_fragments": 586,
                "total_fragments": 1417,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinotalea subterranea",
                "strain": "strain=HO-Ch2",
                "accession": "GCA_008364845.1",
                "taxid": 2607497,
                "species_taxid": 2607497,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6832,
                "matched_fragments": 514,
                "total_fragments": 1417,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas fulva",
                "strain": "strain=DKR-3",
                "accession": "GCA_018531375.1",
                "taxid": 2835530,
                "species_taxid": 2835530,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6121,
                "matched_fragments": 516,
                "total_fragments": 1417,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000024925.1",
                "gtdb_species": "s__Sanguibacter keddieii",
                "ani": 100.0,
                "matched_fragments": 1416,
                "total_fragments": 1417,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Sanguibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_013415325.1",
                "gtdb_species": "s__Sanguibacter inulinus",
                "ani": 86.7467,
                "matched_fragments": 1077,
                "total_fragments": 1417,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Sanguibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.94",
                "min_intra_species_ani": "97.89",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001552735.1",
                "gtdb_species": "s__Sanguibacter suarezii",
                "ani": 81.7357,
                "matched_fragments": 744,
                "total_fragments": 1417,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Sanguibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900096585.1",
                "gtdb_species": "s__Sanguibacter gelidistatuariae",
                "ani": 81.4782,
                "matched_fragments": 727,
                "total_fragments": 1417,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Sanguibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016342785.1",
                "gtdb_species": "s__Sanguibacter sp016342785",
                "ani": 81.1192,
                "matched_fragments": 629,
                "total_fragments": 1417,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Sanguibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002564005.1",
                "gtdb_species": "s__Sanguibacter antarcticus",
                "ani": 80.3946,
                "matched_fragments": 613,
                "total_fragments": 1417,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Sanguibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001722485.1",
                "gtdb_species": "s__Cellulosimicrobium cellulans_A",
                "ani": 79.5553,
                "matched_fragments": 536,
                "total_fragments": 1417,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulosimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010287905.1",
                "gtdb_species": "s__Cellulosimicrobium fucosivorans",
                "ani": 79.466,
                "matched_fragments": 596,
                "total_fragments": 1417,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulosimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.84",
                "min_intra_species_ani": "98.55",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_016907755.1",
                "gtdb_species": "s__Cellulosimicrobium cellulans_D",
                "ani": 79.4545,
                "matched_fragments": 644,
                "total_fragments": 1417,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulosimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.18",
                "min_intra_species_ani": "99.18",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003470205.1",
                "gtdb_species": "s__Cellulomonas rhizosphaerae",
                "ani": 79.1455,
                "matched_fragments": 496,
                "total_fragments": 1417,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008033115.1",
                "gtdb_species": "s__Cellulomonas sp008033115",
                "ani": 79.05,
                "matched_fragments": 635,
                "total_fragments": 1417,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.34",
                "min_intra_species_ani": "96.34",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001462455.1",
                "gtdb_species": "s__Cellulomonas sp001462455",
                "ani": 79.0237,
                "matched_fragments": 553,
                "total_fragments": 1417,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011603975.1",
                "gtdb_species": "s__Cellulomonas sp011603975",
                "ani": 78.9536,
                "matched_fragments": 534,
                "total_fragments": 1417,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016464425.1",
                "gtdb_species": "s__Actinotalea solisilvae",
                "ani": 78.9357,
                "matched_fragments": 574,
                "total_fragments": 1417,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007991755.1",
                "gtdb_species": "s__Cellulomonas aerilata",
                "ani": 78.6994,
                "matched_fragments": 517,
                "total_fragments": 1417,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017744555.1",
                "gtdb_species": "s__Cellulomonas sp017744555",
                "ani": 78.3968,
                "matched_fragments": 546,
                "total_fragments": 1417,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 1.354,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 27.5,
        "optimum_ph": 6.375,
        "genome_size": 3937843.667,
        "gc_content": 71.9,
        "coding_genes": 3637.667,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 51.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Sanguibacter",
        "keddieii",
        "DSM",
        "10542"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}