{ "type": "genome", "identifier": "GCF_000025265.1", "organism": "Conexibacter woesei DSM 14684", "title": "Conexibacter woesei DSM 14684", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US DOE Joint Genome Institute (JGI-PGF)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000025265.1", "bioproject": "PRJNA224116", "biosample": "SAMN00002582", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "469383", "species_taxid": "191495", "organism_name": "Conexibacter woesei DSM 14684", "infraspecific_name": "strain=DSM 14684", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2010/01/15", "asm_name": "ASM2526v1", "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)", "gbrs_paired_asm": "GCA_000025265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/025/265/GCF_000025265.1_ASM2526v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6359369", "genome_size_ungapped": "6359369", "gc_percent": "72.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000025265.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "6020", "protein_coding_gene_count": "5941", "non_coding_gene_count": "52", "pubmed_id": "21304704" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2010-01-15", "dateModified": "2010-01-15", "datePublished": "2010-01-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Conexibacter woesei DSM 14684" ], "sample_taxid": [ "469383" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.649 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6359369", "Number of Sequences": "1", "Longest Sequences (bp)": "6359369", "N50 (bp)": "6359369", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.7", "Number of CDSs": "6006", "Average Protein Length": "332.9", "Coding Ratio (%)": "94.3", "Number of rRNAs": "3", "Number of tRNAs": "71", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Conexibacter woesei", "strain": "strain=DSM 14684", "accession": "GCA_000025265.1", "taxid": 191495, "species_taxid": 191495, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2119, "total_fragments": 2119, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Conexibacter arvalis", "strain": "strain=DSM 23288", "accession": "GCA_014199525.1", "taxid": 912552, "species_taxid": 912552, "relation_to_type": "type", "validated": true, "ani": 84.2949, "matched_fragments": 1219, "total_fragments": 2119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Capillimicrobium parvum", "strain": "strain=0166_1", "accession": "GCA_021172045.1", "taxid": 2884022, "species_taxid": 2884022, "relation_to_type": "type", "validated": true, "ani": 77.5955, "matched_fragments": 843, "total_fragments": 2119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraconexibacter algicola", "strain": "strain=Seoho-28", "accession": "GCA_003044185.1", "taxid": 2133960, "species_taxid": 2133960, "relation_to_type": "type", "validated": true, "ani": 77.456, "matched_fragments": 796, "total_fragments": 2119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Patulibacter medicamentivorans", "strain": "strain=I11", "accession": "GCA_000240225.2", "taxid": 1097667, "species_taxid": 1097667, "relation_to_type": "type", "validated": true, "ani": 77.3904, "matched_fragments": 732, "total_fragments": 2119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solirubrobacter pauli", "strain": "strain=DSM 14954", "accession": "GCA_003633755.1", "taxid": 166793, "species_taxid": 166793, "relation_to_type": "type", "validated": true, "ani": 77.1725, "matched_fragments": 891, "total_fragments": 2119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Baekduia soli", "strain": "strain=BR7-21", "accession": "GCA_007970665.1", "taxid": 496014, "species_taxid": 496014, "relation_to_type": "type", "validated": true, "ani": 77.1118, "matched_fragments": 776, "total_fragments": 2119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Patulibacter minatonensis", "strain": "strain=DSM 18081", "accession": "GCA_000519325.1", "taxid": 298163, "species_taxid": 298163, "relation_to_type": "type", "validated": true, "ani": 76.6388, "matched_fragments": 701, "total_fragments": 2119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Patulibacter americanus", "strain": "strain=DSM 16676", "accession": "GCA_000420025.1", "taxid": 588672, "species_taxid": 588672, "relation_to_type": "type", "validated": true, "ani": 76.6071, "matched_fragments": 660, "total_fragments": 2119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces fucosus", "strain": "strain=CCUG 35506", "accession": "GCA_004134865.1", "taxid": 41985, "species_taxid": 41985, "relation_to_type": "type", "validated": true, "ani": 75.063, "matched_fragments": 385, "total_fragments": 2119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora inositola", "strain": "strain=DSM 43819", "accession": "GCA_900090285.1", "taxid": 47865, "species_taxid": 47865, "relation_to_type": "type", "validated": true, "ani": 75.0556, "matched_fragments": 456, "total_fragments": 2119, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000025265.1", "gtdb_species": "s__Conexibacter woesei", "ani": 100.0, "matched_fragments": 2119, "total_fragments": 2119, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__Conexibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014199525.1", "gtdb_species": "s__Conexibacter arvalis", 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896, "total_fragments": 2119, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__Solirubrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902806175.1", "gtdb_species": "s__CADCVQ01 sp902806175", "ani": 77.6275, "matched_fragments": 630, "total_fragments": 2119, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__CADCVQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000424625.1", "gtdb_species": "s__Baekduia woesei_A", "ani": 77.5089, "matched_fragments": 896, "total_fragments": 2119, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Conexibacter", "woesei", "DSM", "14684" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }