{
    "type": "genome",
    "identifier": "GCF_000025625.1",
    "organism": "Natrialba magadii ATCC 43099",
    "title": "Natrialba magadii ATCC 43099",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US DOE Joint Genome Institute (JGI-PGF)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000025625.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02598473",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "547559",
        "species_taxid": "13769",
        "organism_name": "Natrialba magadii ATCC 43099",
        "infraspecific_name": "strain=ATCC 43099",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2010/02/24",
        "asm_name": "ASM2562v1",
        "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)",
        "gbrs_paired_asm": "GCA_000025625.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/025/625/GCF_000025625.1_ASM2562v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "4443643",
        "genome_size_ungapped": "4443643",
        "gc_percent": "61.000000",
        "replicon_count": "4",
        "scaffold_count": "4",
        "contig_count": "4",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000025625.1-RS_2024_12_01",
        "annotation_date": "2024-12-01",
        "total_gene_count": "4258",
        "protein_coding_gene_count": "4123",
        "non_coding_gene_count": "63",
        "pubmed_id": "22559199"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2010-02-24",
    "dateModified": "2010-02-24",
    "datePublished": "2010-02-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Natrialba magadii ATCC 43099"
        ],
        "sample_taxid": [
            "547559"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "None"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.236 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4443643",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "3751858",
        "N50 (bp)": "3751858",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "61.1",
        "Number of CDSs": "4185",
        "Average Protein Length": "294.6",
        "Coding Ratio (%)": "83.2",
        "Number of rRNAs": "12",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Natrialba magadii",
                "strain": "strain=ATCC 43099",
                "accession": "GCA_000025625.1",
                "taxid": 13769,
                "species_taxid": 13769,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1479,
                "total_fragments": 1479,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Natrialba magadii",
                "strain": "strain=MS-3",
                "accession": "GCA_000337875.1",
                "taxid": 13769,
                "species_taxid": 13769,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9503,
                "matched_fragments": 1434,
                "total_fragments": 1479,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Natrialba hulunbeirensis",
                "strain": "strain=JCM 10989",
                "accession": "GCA_000337575.1",
                "taxid": 123783,
                "species_taxid": 123783,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.9523,
                "matched_fragments": 1127,
                "total_fragments": 1479,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natrialba chahannaoensis",
                "strain": "strain=JCM 10990",
                "accession": "GCA_000337135.1",
                "taxid": 68911,
                "species_taxid": 68911,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.1798,
                "matched_fragments": 1084,
                "total_fragments": 1479,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natrialba aegyptia",
                "strain": "strain=DSM 13077",
                "accession": "GCA_000337535.1",
                "taxid": 129789,
                "species_taxid": 129789,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6638,
                "matched_fragments": 821,
                "total_fragments": 1479,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natrialba taiwanensis",
                "strain": "strain=DSM 12281",
                "accession": "GCA_000337595.1",
                "taxid": 160846,
                "species_taxid": 160846,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6327,
                "matched_fragments": 802,
                "total_fragments": 1479,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natrinema amylolyticum",
                "strain": "strain=LT61",
                "accession": "GCA_020515625.1",
                "taxid": 2878679,
                "species_taxid": 2878679,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.917,
                "matched_fragments": 631,
                "total_fragments": 1479,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 8.33,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000025625.1",
                "gtdb_species": "s__Natrialba magadii",
                "ani": 100.0,
                "matched_fragments": 1479,
                "total_fragments": 1479,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrialba",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001861355.1",
                "gtdb_species": "s__Natrialba sp001861355",
                "ani": 90.5085,
                "matched_fragments": 1143,
                "total_fragments": 1479,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrialba",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000337575.1",
                "gtdb_species": "s__Natrialba hulunbeirensis",
                "ani": 89.9639,
                "matched_fragments": 1126,
                "total_fragments": 1479,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrialba",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000337135.1",
                "gtdb_species": "s__Natrialba chahannaoensis",
                "ani": 89.1643,
                "matched_fragments": 1084,
                "total_fragments": 1479,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrialba",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000337535.1",
                "gtdb_species": "s__Natrialba aegyptia",
                "ani": 81.6645,
                "matched_fragments": 820,
                "total_fragments": 1479,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrialba",
                "ani_circumscription_radius": 95.4145,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000337595.1",
                "gtdb_species": "s__Natrialba taiwanensis",
                "ani": 81.6354,
                "matched_fragments": 801,
                "total_fragments": 1479,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrialba",
                "ani_circumscription_radius": 95.4145,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004799645.1",
                "gtdb_species": "s__Natronorubrum bangense",
                "ani": 79.5768,
                "matched_fragments": 592,
                "total_fragments": 1479,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natronorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.90",
                "min_intra_species_ani": "95.84",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.155,
        "cell_length": 0.301,
        "doubling_h": 0.413,
        "growth_tmp": 37.0,
        "optimum_tmp": 38.5,
        "optimum_ph": 9.5,
        "genome_size": 4443642.4,
        "gc_content": 60.175,
        "coding_genes": 4105.667,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 49.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Natrialba",
        "magadii",
        "ATCC",
        "43099"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}