{
    "type": "genome",
    "identifier": "GCF_000025925.1",
    "organism": "Xylanibacter ruminicola 23",
    "title": "Xylanibacter ruminicola 23",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "TIGR",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000025925.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02604020",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "264731",
        "species_taxid": "839",
        "organism_name": "Xylanibacter ruminicola 23",
        "infraspecific_name": "strain=Bryant 23",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2010/04/09",
        "asm_name": "ASM2592v1",
        "asm_submitter": "TIGR",
        "gbrs_paired_asm": "GCA_000025925.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/025/925/GCF_000025925.1_ASM2592v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3619559",
        "genome_size_ungapped": "3619559",
        "gc_percent": "47.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000025925.1-RS_2025_01_08",
        "annotation_date": "2025-01-08",
        "total_gene_count": "3063",
        "protein_coding_gene_count": "2964",
        "non_coding_gene_count": "68",
        "pubmed_id": "20585943"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2010-04-09",
    "dateModified": "2010-04-09",
    "datePublished": "2010-04-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Xylanibacter ruminicola 23"
        ],
        "sample_taxid": [
            "264731"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.028 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3619559",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3619559",
        "N50 (bp)": "3619559",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.7",
        "Number of CDSs": "2981",
        "Average Protein Length": "368.9",
        "Coding Ratio (%)": "91.1",
        "Number of rRNAs": "12",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Prevotella ruminicola",
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                "accession": "GCA_000025925.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Prevotella ruminicola",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
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                "accession": "GCA_000621725.1",
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            {
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Prevotella fusca",
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                "accession": "GCA_018128145.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
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                "relation_to_type": "suspected-type",
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                "accession": "GCA_009495405.1",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella buccae",
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                "accession": "GCA_000184945.1",
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                "species_taxid": 28126,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4518,
                "matched_fragments": 68,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xylanibacter rodentium",
                "strain": "strain=PROD",
                "accession": "GCA_013166575.1",
                "taxid": 2736289,
                "species_taxid": 2736289,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hallella faecis",
                "strain": "strain=CLA-AA-H145",
                "accession": "GCA_018789675.1",
                "taxid": 2841596,
                "species_taxid": 2841596,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2572,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella stercorea",
                "strain": "strain=DSM 18206",
                "accession": "GCA_000235885.1",
                "taxid": 363265,
                "species_taxid": 363265,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.2475,
                "matched_fragments": 92,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella multiformis",
                "strain": "strain=DSM 16608",
                "accession": "GCA_000191065.1",
                "taxid": 282402,
                "species_taxid": 282402,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 58,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella illustrans",
                "strain": "strain=A2931",
                "accession": "GCA_017426725.1",
                "taxid": 2800387,
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                "relation_to_type": "type",
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                "ani": 76.9066,
                "matched_fragments": 54,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "strain_heterogeneity": 0.0
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                "accession": "GCF_000025925.1",
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                "min_intra_species_ani": "96.82",
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                "mean_intra_species_ani": "N/A",
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                "accession": "GCF_000619825.1",
                "gtdb_species": "s__Prevotella sp000619825",
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            },
            {
                "accession": "GCF_000702825.1",
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": null,
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    },
    "_genome_taxon": [
        "Xylanibacter",
        "ruminicola",
        "23"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}