{ "type": "genome", "identifier": "GCF_000046705.1", "organism": "Bartonella henselae str. Houston-1", "title": "Bartonella henselae str. Houston-1", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Uppsala Univ.", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000046705.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3138249", "wgs_master": "na", "refseq_category": "na", "taxid": "283166", "species_taxid": "38323", "organism_name": "Bartonella henselae str. 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Houston-1" ], "sample_taxid": [ "283166" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.535 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1931047", "Number of Sequences": "1", "Longest Sequences (bp)": "1931047", "N50 (bp)": "1931047", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.2", "Number of CDSs": "1619", "Average Protein Length": "293.0", "Coding Ratio (%)": "73.7", "Number of rRNAs": "7", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bartonella henselae", "strain": "strain=Houston-1", "accession": "GCA_000046705.1", "taxid": 38323, "species_taxid": 38323, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 641, "total_fragments": 643, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bartonella henselae", "strain": "strain=FDAARGOS_175", "accession": "GCA_001525625.2", "taxid": 38323, "species_taxid": 38323, "relation_to_type": "type", "validated": true, "ani": 99.9773, "matched_fragments": 633, "total_fragments": 643, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bartonella henselae", "strain": "strain=Houston-I", "accession": "GCA_002735245.1", "taxid": 38323, "species_taxid": 38323, "relation_to_type": "type", "validated": true, "ani": 99.9767, "matched_fragments": 635, "total_fragments": 643, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bartonella henselae", "strain": "strain=FDAARGOS_1462", "accession": "GCA_019930925.1", "taxid": 38323, "species_taxid": 38323, "relation_to_type": "type", "validated": true, "ani": 99.9762, "matched_fragments": 633, "total_fragments": 643, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bartonella henselae", "strain": "strain=G-5436", "accession": "GCA_021560445.1", "taxid": 38323, "species_taxid": 38323, "relation_to_type": "type", "validated": true, "ani": 99.9759, "matched_fragments": 635, "total_fragments": 643, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bartonella harrusi", "strain": "strain=117A", "accession": "GCA_024297065.1", "taxid": 2961895, "species_taxid": 2961895, "relation_to_type": "type", "validated": true, "ani": 82.6822, "matched_fragments": 496, "total_fragments": 643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella kosoyi", "strain": "strain=Tel Aviv", "accession": "GCA_003606325.3", "taxid": 2133959, "species_taxid": 2133959, "relation_to_type": "type", "validated": true, "ani": 82.6607, "matched_fragments": 518, "total_fragments": 643, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000046705.1", "gtdb_species": "s__Bartonella henselae", "ani": 100.0, "matched_fragments": 639, "total_fragments": 643, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.52", "min_intra_species_ani": "98.81", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.94", "num_clustered_genomes": 29, "status": "conclusive" }, { "accession": "GCF_000706625.1", "gtdb_species": "s__Bartonella koehlerae", "ani": 91.9322, "matched_fragments": 554, "total_fragments": 643, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000312545.1", "gtdb_species": "s__Bartonella senegalensis", "ani": 89.2837, "matched_fragments": 570, "total_fragments": 643, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009936175.1", "gtdb_species": "s__Bartonella quintana", "ani": 86.0148, "matched_fragments": 482, "total_fragments": 643, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.46", "min_intra_species_ani": "98.37", 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"min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_014203215.1", "gtdb_species": "s__Bartonella callosciuri", "ani": 84.2226, "matched_fragments": 460, "total_fragments": 643, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902825145.1", "gtdb_species": "s__Bartonella phoceensis", "ani": 84.1233, "matched_fragments": 494, "total_fragments": 643, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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} ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.315, "cell_length": 0.071, "doubling_h": 0.477, "growth_tmp": 35.5, "optimum_tmp": 37.0, "optimum_ph": 7.3, "genome_size": 1920218.4, "gc_content": 38.2, "coding_genes": 1541.222, "rRNA16S_genes": 2.0, "tRNA_genes": 42.667, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Bartonella", "henselae", "str.", "Houston-1" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }