{
    "type": "genome",
    "identifier": "GCF_000069785.1",
    "organism": "Cupriavidus taiwanensis LMG 19424",
    "title": "Cupriavidus taiwanensis LMG 19424",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Genoscope",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000069785.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA3138280",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "977880",
        "species_taxid": "164546",
        "organism_name": "Cupriavidus taiwanensis LMG 19424",
        "infraspecific_name": "strain=LMG 19424",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Chromosome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2008/03/27",
        "asm_name": "ASM6978v1",
        "asm_submitter": "Genoscope",
        "gbrs_paired_asm": "GCA_000069785.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/069/785/GCF_000069785.1_ASM6978v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6476522",
        "genome_size_ungapped": "6476359",
        "gc_percent": "67.000000",
        "replicon_count": "3",
        "scaffold_count": "3",
        "contig_count": "3",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000069785.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "5921",
        "protein_coding_gene_count": "5730",
        "non_coding_gene_count": "84",
        "pubmed_id": "18490699"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2008-03-27",
    "dateModified": "2008-03-27",
    "datePublished": "2008-03-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Cupriavidus taiwanensis LMG 19424"
        ],
        "sample_taxid": [
            "977880"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.758 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6476522",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "3416911",
        "N50 (bp)": "3416911",
        "Gap Ratio (%)": "0.002517",
        "GCcontent (%)": "67.0",
        "Number of CDSs": "5913",
        "Average Protein Length": "320.7",
        "Coding Ratio (%)": "87.9",
        "Number of rRNAs": "15",
        "Number of tRNAs": "69",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Cupriavidus taiwanensis",
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                "accession": "GCA_000069785.1",
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                "species_taxid": 164546,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2156,
                "total_fragments": 2157,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Cupriavidus neocaledonicus",
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                "accession": "GCA_000372525.1",
                "taxid": 1040979,
                "species_taxid": 1040979,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cupriavidus nantongensis",
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                "taxid": 1796606,
                "species_taxid": 1796606,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cupriavidus alkaliphilus",
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                "species_taxid": 942866,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.585,
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                "total_fragments": 2157,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cupriavidus lacunae",
                "strain": "strain=S23",
                "accession": "GCA_003353055.1",
                "taxid": 2666307,
                "species_taxid": 2666307,
                "relation_to_type": "type",
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                "ani": 89.6685,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cupriavidus oxalaticus",
                "strain": "strain=Ox1",
                "accession": "GCA_016894385.1",
                "taxid": 96344,
                "species_taxid": 96344,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.6155,
                "matched_fragments": 1556,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cupriavidus numazuensis",
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                "accession": "GCA_905397435.1",
                "taxid": 221992,
                "species_taxid": 221992,
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                "validated": true,
                "ani": 84.7634,
                "matched_fragments": 1332,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Burkholderia perseverans",
                "strain": "strain=INN12",
                "accession": "GCA_022870505.1",
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                "species_taxid": 2615214,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia agilis",
                "strain": "strain=JCM 31605",
                "accession": "GCA_024756255.1",
                "taxid": 1811226,
                "species_taxid": 1811226,
                "relation_to_type": "type",
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                "ani": 78.7215,
                "matched_fragments": 556,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia solisilvae",
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                "accession": "GCA_024753215.1",
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                "species_taxid": 1811225,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia podalyriae",
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                "accession": "GCA_014397785.1",
                "taxid": 1938811,
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            }
        ],
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                "accession": "GCF_000069785.1",
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    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "LMG",
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}