{ "type": "genome", "identifier": "GCF_000091325.1", "organism": "Shewanella violacea DSS12", "title": "Shewanella violacea DSS12", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nara Institute of Science and Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000091325.1", "bioproject": "PRJNA224116", "biosample": "SAMD00060963", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "637905", "species_taxid": "60217", "organism_name": "Shewanella violacea DSS12", "infraspecific_name": "strain=DSS12", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2010/04/01", "asm_name": "ASM9132v1", "asm_submitter": "Nara Institute of Science and Technology", "gbrs_paired_asm": "GCA_000091325.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/091/325/GCF_000091325.1_ASM9132v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4962103", "genome_size_ungapped": "4962103", "gc_percent": "44.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000091325.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "4168", "protein_coding_gene_count": "3919", "non_coding_gene_count": "174", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2010-04-01", "dateModified": "2010-04-01", "datePublished": "2010-04-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Shewanella violacea DSS12" ], "sample_taxid": [ "637905" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.400 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4962103", "Number of Sequences": "1", "Longest Sequences (bp)": "4962103", "N50 (bp)": "4962103", "Gap Ratio (%)": "0.000101", "GCcontent (%)": "44.7", "Number of CDSs": "4023", "Average Protein Length": "332.9", "Coding Ratio (%)": "81.0", "Number of rRNAs": "43", "Number of tRNAs": "127", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Shewanella violacea", "strain": "strain=DSS12", "accession": "GCA_000091325.1", "taxid": 60217, "species_taxid": 60217, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1654, "total_fragments": 1654, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Shewanella psychropiezotolerans", "strain": "strain=YLB-06", "accession": "GCA_007197555.1", "taxid": 2593655, "species_taxid": 2593655, "relation_to_type": "type", "validated": true, "ani": 87.0558, "matched_fragments": 1334, "total_fragments": 1654, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella benthica", "strain": "strain=DSM 8812", "accession": "GCA_015069875.1", "taxid": 43661, "species_taxid": 43661, "relation_to_type": "type", "validated": true, "ani": 86.7027, "matched_fragments": 921, "total_fragments": 1654, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella psychrophila", "strain": "strain=WP2", "accession": "GCA_002005305.1", "taxid": 225848, "species_taxid": 225848, "relation_to_type": "type", "validated": true, "ani": 84.7671, "matched_fragments": 1281, "total_fragments": 1654, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella eurypsychrophilus", "strain": "strain=YLB-08", "accession": "GCA_007004545.3", "taxid": 2593656, "species_taxid": 2593656, "relation_to_type": "type", "validated": true, "ani": 81.202, "matched_fragments": 872, "total_fragments": 1654, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella canadensis", "strain": "strain=HAW-EB2", "accession": "GCA_003966225.1", "taxid": 271096, "species_taxid": 271096, "relation_to_type": "type", "validated": true, "ani": 79.4211, "matched_fragments": 548, "total_fragments": 1654, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella vesiculosa", "strain": "strain=M7", "accession": "GCA_021560015.1", "taxid": 518738, "species_taxid": 518738, "relation_to_type": "type", "validated": true, "ani": 79.0758, "matched_fragments": 168, "total_fragments": 1654, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella gelidimarina", "strain": "strain=ATCC 700752", "accession": "GCA_023283945.1", "taxid": 56813, "species_taxid": 56813, "relation_to_type": "type", "validated": true, "ani": 78.5171, "matched_fragments": 292, "total_fragments": 1654, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella marisflavi", "strain": "strain=JCM 12192", "accession": "GCA_023283925.1", "taxid": 260364, "species_taxid": 260364, "relation_to_type": "type", "validated": true, "ani": 78.2717, "matched_fragments": 325, "total_fragments": 1654, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parashewanella spongiae", "strain": "strain=KCTC 22492", "accession": "GCA_023283745.1", "taxid": 342950, "species_taxid": 342950, "relation_to_type": "type", "validated": true, "ani": 77.8441, "matched_fragments": 100, "total_fragments": 1654, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella corallii", "strain": "strain=DSM 21332", "accession": "GCA_023349125.1", "taxid": 560080, "species_taxid": 560080, "relation_to_type": "type", "validated": true, "ani": 77.4453, "matched_fragments": 142, "total_fragments": 1654, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000091325.1", "gtdb_species": "s__Shewanella violacea", "ani": 100.0, "matched_fragments": 1654, "total_fragments": 1654, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_007197555.1", "gtdb_species": "s__Shewanella sp007197555", "ani": 87.0524, "matched_fragments": 1333, "total_fragments": 1654, "gtdb_taxonomy": 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