{ "type": "genome", "identifier": "GCF_000092245.1", "organism": "Arcobacter nitrofigilis DSM 7299", "title": "Arcobacter nitrofigilis DSM 7299", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US DOE Joint Genome Institute (JGI-PGF)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000092245.1", "bioproject": "PRJNA224116", "biosample": "SAMN02598489", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "572480", "species_taxid": "28199", "organism_name": "Arcobacter nitrofigilis DSM 7299", "infraspecific_name": "strain=DSM 7299", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2010/05/17", "asm_name": "ASM9224v1", "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)", "gbrs_paired_asm": "GCA_000092245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/092/245/GCF_000092245.1_ASM9224v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3192235", "genome_size_ungapped": "3192235", "gc_percent": "28.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000092245.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3200", "protein_coding_gene_count": "3118", "non_coding_gene_count": "69", "pubmed_id": "21304714" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2010-05-17", "dateModified": "2010-05-17", "datePublished": "2010-05-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Arcobacter nitrofigilis DSM 7299" ], "sample_taxid": [ "572480" ], "sample_host_organism": [ "Sporobolus alterniflorus" ], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Nova Scotia" ], "sample_host_location_id": [], "data_size": "0.858 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3192235", "Number of Sequences": "1", "Longest Sequences (bp)": "3192235", "N50 (bp)": "3192235", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "28.4", "Number of CDSs": "3143", "Average Protein Length": "315.6", "Coding Ratio (%)": "93.2", "Number of rRNAs": "12", "Number of tRNAs": "56", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arcobacter nitrofigilis", "strain": "strain=DSM 7299", "accession": "GCA_000092245.1", 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"total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter butzleri", "strain": "strain=NCTC 12481", "accession": "GCA_900187115.1", "taxid": 28197, "species_taxid": 28197, "relation_to_type": "type", "validated": true, "ani": 79.3377, "matched_fragments": 349, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter bivalviorum", "strain": "strain=LMG 26154", "accession": "GCA_003346815.1", "taxid": 663364, "species_taxid": 663364, "relation_to_type": "type", "validated": true, "ani": 79.3307, "matched_fragments": 383, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter canalis", "strain": "strain=LMG 29148", "accession": "GCA_008000835.1", "taxid": 1912871, "species_taxid": 1912871, "relation_to_type": "type", "validated": true, "ani": 79.2977, "matched_fragments": 400, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter molluscorum", "strain": "strain=F98-3", "accession": "GCA_002701265.1", "taxid": 1032072, "species_taxid": 1032072, "relation_to_type": "type", "validated": true, "ani": 79.197, "matched_fragments": 418, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter bivalviorum", "strain": "strain=CECT 7835", "accession": "GCA_004116675.1", "taxid": 663364, "species_taxid": 663364, "relation_to_type": "type", "validated": true, "ani": 79.1605, "matched_fragments": 382, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter defluvii", "strain": "strain=CECT 7697", "accession": "GCA_004115775.1", "taxid": 873191, "species_taxid": 873191, "relation_to_type": "type", "validated": true, "ani": 79.1041, "matched_fragments": 401, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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