{
    "type": "genome",
    "identifier": "GCF_000092845.1",
    "organism": "Brachyspira murdochii DSM 12563",
    "title": "Brachyspira murdochii DSM 12563",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US DOE Joint Genome Institute (JGI-PGF)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000092845.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00001910",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "526224",
        "species_taxid": "84378",
        "organism_name": "Brachyspira murdochii DSM 12563",
        "infraspecific_name": "strain=DSM 12563",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2010/05/13",
        "asm_name": "ASM9284v1",
        "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)",
        "gbrs_paired_asm": "GCA_000092845.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/092/845/GCF_000092845.1_ASM9284v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3241804",
        "genome_size_ungapped": "3241804",
        "gc_percent": "28.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000092845.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "2899",
        "protein_coding_gene_count": "2827",
        "non_coding_gene_count": "41",
        "pubmed_id": "21304710"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2010-05-13",
    "dateModified": "2010-05-13",
    "datePublished": "2010-05-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Brachyspira murdochii DSM 12563"
        ],
        "sample_taxid": [
            "526224"
        ],
        "sample_host_organism": [
            "Swine"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "None"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada"
        ],
        "sample_host_location_id": [],
        "data_size": "0.869 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3241804",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3241804",
        "N50 (bp)": "3241804",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "27.8",
        "Number of CDSs": "2899",
        "Average Protein Length": "323.8",
        "Coding Ratio (%)": "86.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Brachyspira murdochii",
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                "relation_to_type": "type",
                "validated": true,
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            },
            {
                "organism_name": "Brachyspira innocens",
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                "accession": "GCA_000384655.1",
                "taxid": 13264,
                "species_taxid": 13264,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachyspira hampsonii",
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            },
            {
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                "validated": true,
                "ani": 85.9738,
                "matched_fragments": 801,
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                "ani_threshold": 95,
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            },
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                "ani": 83.6805,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachyspira hyodysenteriae",
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                "accession": "GCA_001013005.1",
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                "species_taxid": 159,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachyspira suanatina",
                "strain": "strain=AN4859/03",
                "accession": "GCA_001049755.1",
                "taxid": 381802,
                "species_taxid": 381802,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Brachyspira hyodysenteriae",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Brachyspira intermedia",
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                "accession": "GCA_000223215.1",
                "taxid": 84377,
                "species_taxid": 84377,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4669,
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                "total_fragments": 1080,
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                "status": "below_threshold"
            }
        ],
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            "contamination": 0.0,
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                "accession": "GCF_000092845.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            {
                "accession": "GCF_002379365.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira",
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                "mean_intra_species_ani": "N/A",
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            {
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}