{ "type": "genome", "identifier": "GCF_000092965.1", "organism": "Thermoanaerobacter mathranii subsp. mathranii str. A3", "title": "Thermoanaerobacter mathranii subsp. mathranii str. A3", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US DOE Joint Genome Institute (JGI-PGF)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000092965.1", "bioproject": "PRJNA224116", "biosample": "SAMN02598500", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "583358", "species_taxid": "583357", "organism_name": "Thermoanaerobacter mathranii subsp. mathranii str. 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"GCA_000262445.1", "taxid": 106578, "species_taxid": 106578, "relation_to_type": "type", "validated": true, "ani": 90.6593, "matched_fragments": 601, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermoanaerobacter uzonensis", "strain": "strain=DSM 18761", "accession": "GCA_900129115.1", "taxid": 447593, "species_taxid": 447593, "relation_to_type": "type", "validated": true, "ani": 90.1878, "matched_fragments": 575, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermoanaerobacter kivui", "strain": "strain=DSM 2030; LKT-1", "accession": "GCA_000763575.1", "taxid": 2325, "species_taxid": 2325, "relation_to_type": "type", "validated": true, "ani": 86.4094, "matched_fragments": 526, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001310975.1", "gtdb_species": "s__Thermoanaerobacter thermocopriae", "ani": 98.5282, "matched_fragments": 632, "total_fragments": 768, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermoanaerobacteria;o__Thermoanaerobacterales;f__Thermoanaerobacteraceae;g__Thermoanaerobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.14", "min_intra_species_ani": "96.24", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_000019085.1", "gtdb_species": "s__Thermoanaerobacter pseudethanolicus", "ani": 91.7358, "matched_fragments": 594, "total_fragments": 768, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermoanaerobacteria;o__Thermoanaerobacterales;f__Thermoanaerobacteraceae;g__Thermoanaerobacter", "ani_circumscription_radius": 95.1128, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "97.55", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.81", 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003722315.1", "gtdb_species": "s__Thermoanaerobacter ethanolicus", "ani": 90.4174, "matched_fragments": 629, "total_fragments": 768, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermoanaerobacteria;o__Thermoanaerobacterales;f__Thermoanaerobacteraceae;g__Thermoanaerobacter", "ani_circumscription_radius": 96.9409, "mean_intra_species_ani": "98.23", "min_intra_species_ani": "97.61", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.74", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_900129115.1", "gtdb_species": "s__Thermoanaerobacter uzonensis", "ani": 90.1608, "matched_fragments": 576, "total_fragments": 768, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermoanaerobacteria;o__Thermoanaerobacterales;f__Thermoanaerobacteraceae;g__Thermoanaerobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.59", "min_intra_species_ani": "96.59", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_014896455.1", "gtdb_species": "s__Thermoanaerobacter sp014896455", "ani": 89.2893, "matched_fragments": 508, "total_fragments": 768, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermoanaerobacteria;o__Thermoanaerobacterales;f__Thermoanaerobacteraceae;g__Thermoanaerobacter", "ani_circumscription_radius": 95.6271, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000763575.1", "gtdb_species": "s__Thermoanaerobacter kivui", "ani": 86.4379, "matched_fragments": 522, "total_fragments": 768, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermoanaerobacteria;o__Thermoanaerobacterales;f__Thermoanaerobacteraceae;g__Thermoanaerobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.353, "cell_length": 0.346, "doubling_h": 0.145, "growth_tmp": 64.021, "optimum_tmp": 65.234, "optimum_ph": 7.192, "genome_size": 2505621.513, "gc_content": 34.525, "coding_genes": 2284.4, "rRNA16S_genes": 4.0, "tRNA_genes": 56.2, "gram_stain": 0.923, "sporulation": 1.0, "motility": 0.888, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 1.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Thermoanaerobacter", "mathranii", "subsp.", "mathranii", "str.", "A3" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }