{ "type": "genome", "identifier": "GCF_000143845.1", "organism": "Olsenella uli DSM 7084", "title": "Olsenella uli DSM 7084", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US DOE Joint Genome Institute (JGI-PGF)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000143845.1", "bioproject": "PRJNA224116", "biosample": "SAMN00016989", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "633147", "species_taxid": "133926", "organism_name": "Olsenella uli DSM 7084", "infraspecific_name": "strain=DSM 7084", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2010/07/26", "asm_name": "ASM14384v1", "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)", "gbrs_paired_asm": "GCA_000143845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/143/845/GCF_000143845.1_ASM14384v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2051896", "genome_size_ungapped": "2051896", "gc_percent": "64.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000143845.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "1823", "protein_coding_gene_count": "1757", "non_coding_gene_count": "55", "pubmed_id": "21304694" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2010-07-26", "dateModified": "2010-07-26", "datePublished": "2010-07-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Olsenella uli DSM 7084" ], "sample_taxid": [ "633147" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "Missing" ], "sample_host_location_id": [], "data_size": "0.569 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2051896", "Number of Sequences": "1", "Longest Sequences (bp)": "2051896", "N50 (bp)": "2051896", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.7", "Number of CDSs": "1816", "Average Protein Length": "331.4", "Coding Ratio (%)": "88.0", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Olsenella uli", "strain": "strain=DSM 7084", "accession": "GCA_000143845.1", "taxid": 133926, "species_taxid": 133926, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 683, "total_fragments": 683, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Olsenella uli", "strain": "strain=DSM 7084", "accession": "GCA_001437585.1", "taxid": 133926, "species_taxid": 133926, "relation_to_type": "suspected-type", "validated": true, "ani": 99.984, "matched_fragments": 676, "total_fragments": 683, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Olsenella phocaeensis", "strain": "strain=Marseille-P2936", "accession": "GCA_900120385.1", "taxid": 1852385, "species_taxid": 1852385, "relation_to_type": "type", "validated": true, "ani": 80.775, "matched_fragments": 311, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella intestinalis", "strain": "strain=KCTC 25379", "accession": "GCA_023276655.1", "taxid": 2930083, "species_taxid": 2930083, "relation_to_type": "type", "validated": true, "ani": 80.5593, "matched_fragments": 307, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella urininfantis", "strain": "strain=Marseille-P3197", "accession": "GCA_900155635.1", "taxid": 1871033, "species_taxid": 1871033, "relation_to_type": "type", "validated": true, "ani": 80.1879, "matched_fragments": 272, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella massiliensis", "strain": "strain=SIT9", "accession": "GCA_001457795.1", "taxid": 1622075, "species_taxid": 1622075, "relation_to_type": "type", "validated": true, "ani": 79.6316, "matched_fragments": 247, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermophilibacter mediterraneus", "strain": "strain=Marseille-P3256", "accession": "GCA_900119385.1", "taxid": 1871031, "species_taxid": 1871031, "relation_to_type": "type", "validated": true, "ani": 79.537, "matched_fragments": 255, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parolsenella massiliensis", "strain": "strain=Marseille-P3237", "accession": "GCA_900143685.1", "taxid": 1871022, "species_taxid": 1871022, "relation_to_type": "type", "validated": true, "ani": 78.9523, "matched_fragments": 176, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parolsenella catena", "strain": "strain=JCM 31932", "accession": "GCA_003966955.1", "taxid": 2003188, "species_taxid": 2003188, "relation_to_type": "type", "validated": true, "ani": 78.665, "matched_fragments": 182, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000143845.1", "gtdb_species": "s__Olsenella uli", "ani": 100.0, "matched_fragments": 683, "total_fragments": 683, "gtdb_taxonomy": 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